Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1105 |
Symbol | |
ID | 4309680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 1213423 |
End bp | 1215354 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638148913 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_772998 |
Protein GI | 115351159 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.259511 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGCCA ATCCGAAGTT TCTGTCCGCC GACGCCCACG TCGATGCCGC TGCCGTCGCG CCGCTGCCCA ATTCGCGAAA GGTTTATGTA ACCGGCTCGC AGCCCGACAT CCGCGTGCCG ATGCGTGAAA TCACGCAGGC CGACACGCCG ACCGGCTTCG GCGGCGAAAA GAATCCGCCG ATCTACGTGT ACGACACGTC GGGCCCGTAC ACGGATCCGG ACGCGAAGAT CGACATCCGC GCGGGCCTGC CCGCGCTGCG CCAGGGCTGG ATCGAAGCGC GCGGCGACAC CGAAGTGCTC GACGGCCTGT CGAGCCAGTA CGGCCTCGAG CGCGCGGCCG ACCCGGCCAC CGCCGACCTG CGTTTCCCGG GCCTGCACCG CAACCCGCGC CGCGCGCAGC CGGGCAAGAA CGTCACGCAG ATGCACTACG CGCGTCAGGG CATCATCACG CCGGAAATGG AATACATCGC GATCCGCGAG AACCAGCGCC GCGCCGAGTA CATCGAGAGC CTGAAGTCGA GCGGCCCGAA CGGCGCGAAG CTCGCCGCGA TGATGGGCCG CCAGCACCCG GGCCAGGCGT TCGGCGCCGC GGCCTTCGGC GCGAACGCGC TCGCCGAGAT CACCCCCGAG TTCGTGCGCG ACGAAATCGC GCGCGGCCGC GCGATCATCC CCGCGAACAT CAACCACCCG GAATCCGAGC CGATGATCAT CGGCCGCAAC TTCCTCGTGA AGATCAACGC GAACATCGGC AACTCGGCCG TCACGTCGTC GATCGGCGAG GAAGTCGACA AGATGACGTG GGCGATCCGC TGGGGCGGCG ACACCGTGAT GGACCTGTCG ACCGGCAAGC ACATCCATGA AACGCGCGAG TGGATCATCC GCAACAGCCC GGTGCCGATC GGCACGGTGC CGATCTACCA GGCGCTCGAA AAGGTCAACG GCAAGGCCGA GGATCTCACC TGGGAAATCT TCCGCGACAC GCTGATCGAG CAGGCCGAGC AAGGCGTCGA CTACTTCACG ATCCATGCGG GCGTGCGGCT GCAGTACGTG CCGCTCACCG CGAACCGGAT GACGGGCATC GTGTCGCGCG GCGGCTCGAT CATGGCGAAG TGGTGCCTCG CGCATCACAA GGAAAGCTTC CTGTACGAAC ACTTCGAAGA GATCTGCGAG ATCATGAAGG CGTACGACGT GAGCTTCTCG CTCGGCGACG GCCTGCGTCC CGGCTCGATC TACGACGCGA ACGACGAAGC GCAGCTCGGC GAACTGAAGA CGCTCGGCGA GCTCACGCAG ATCGCATGGA AGCACGACGT GCAGGTGATG ATCGAAGGCC CCGGCCACGT GCCGATGCAG CTGATCAAGG AGAACATGGA TCTCCAGCTC GACTGGTGCA AGGAAGCGCC GTTCTACACG CTCGGGCCGC TGACCACCGA CATCGCACCG GGCTACGACC ACATCACGTC GGGCATCGGC GCCGCGATGA TCGGCTGGTT CGGCACCGCG ATGCTGTGCT ACGTGACGCC GAAGGAACAC CTCGGACTGC CGAACAAGGA CGACGTGAAG GAAGGGATCA TCACGTACAA GCTTGCCGCG CACGCGGCCG ACCTCGCCAA GGGTCACCCC GGCGCGCAGG TGCGCGACAA CGCGCTGTCG AAGGCGCGTT TCGAGTTCCG CTGGGAAGAC CAGTTCAACA TCGGCCTCGA TCCGGACAAG GCGCGCGAAT TCCACGACGA GACGCTGCCG AAGGACTCGG CGAAGGTCGC CCACTTCTGC TCGATGTGCG GCCCGCACTT CTGCTCGATG AAGATCACGC AGGACGTGCG CGAGTTCGCC GCGCAGCAGG GCGTGTCGGA AACCGAGGCG CTGAAGAAGG GGATGGAAGT CAAGGCGGTC GAGTTCGTGA AGACCGGTGC GGAGATCTAT CACCGTCAGT AA
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Protein sequence | MNANPKFLSA DAHVDAAAVA PLPNSRKVYV TGSQPDIRVP MREITQADTP TGFGGEKNPP IYVYDTSGPY TDPDAKIDIR AGLPALRQGW IEARGDTEVL DGLSSQYGLE RAADPATADL RFPGLHRNPR RAQPGKNVTQ MHYARQGIIT PEMEYIAIRE NQRRAEYIES LKSSGPNGAK LAAMMGRQHP GQAFGAAAFG ANALAEITPE FVRDEIARGR AIIPANINHP ESEPMIIGRN FLVKINANIG NSAVTSSIGE EVDKMTWAIR WGGDTVMDLS TGKHIHETRE WIIRNSPVPI GTVPIYQALE KVNGKAEDLT WEIFRDTLIE QAEQGVDYFT IHAGVRLQYV PLTANRMTGI VSRGGSIMAK WCLAHHKESF LYEHFEEICE IMKAYDVSFS LGDGLRPGSI YDANDEAQLG ELKTLGELTQ IAWKHDVQVM IEGPGHVPMQ LIKENMDLQL DWCKEAPFYT LGPLTTDIAP GYDHITSGIG AAMIGWFGTA MLCYVTPKEH LGLPNKDDVK EGIITYKLAA HAADLAKGHP GAQVRDNALS KARFEFRWED QFNIGLDPDK AREFHDETLP KDSAKVAHFC SMCGPHFCSM KITQDVREFA AQQGVSETEA LKKGMEVKAV EFVKTGAEIY HRQ
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