| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0866 |
|---|
| Symbol | |
|---|
| ID | 4310871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 951312 |
|---|
| End bp | 952439 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638148667 |
|---|
| Product | DNA polymerase III, epsilon subunit |
|---|
| Protein accession | YP_772759 |
|---|
| Protein GI | 115350920 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000243712 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATT CCTGTCCGTC CGATCCCGCC TGCGAGCAGC CGCTCGTCTT CGTCGACCTT
GAAACCACCG GCGGCTCGTC CGCCGAGCAC CGCATCACCG AAATCGGCGT GGTCGAAATC
GGCCCGCTCG GTGTGTCGAC GTGGACGACG CTGGTCAACC CGGGACAGTC GATTCCGCCG
TTCATCCAGC AACTGACCGG CATTTCGGAC GACATGGTGC GCGACGCGCC GTCGTTCGCG
TCGCTCGCGC CCACGCTGTT CGAGCGGCTC GACGGCAAGC TGTTCGTCGC GCACAACGCG
AGCTTCGACC GCGGCTTCCT CCGCGCCGAA TTCGAACGTG CCGGCATCGC GTTCAATCCG
GACGTGCTGT GTACGGTGCG GCTGTCGCGC GCGCTGTTTC CGCGCGAGGC GCGCCACGGA
CTCGACGCTT TGATCGAGCG GCATGGCCTC GTCCCCGCGG CCCGCCACCG GGCGCTCGCG
GATGCCGATC TCCTTTGGCA GTTCTGGCGG CAGTTGCACG AGATCGTGCC GCTCGAGCGT
CTGCGCGACC AGATTGCGCG TACGACGCGC CATTTCCGTC TCGCGGGCGG CATGACCGAA
GCGTGGCTTG ATACCGCGCC CGCCGGATGC GGCGTGTACG CGCTATTCGG GGAGGGCGAC
GAAGCCCTTT ACGTCGGGCG CAGTGTGCGG GTGCGGCAGC GCTTGCGCGC GTTGCTGACC
GGCGAGCGGC GCTCGTCGAA GGAGATGCGG CTCGCGCAGC AGGTGCGGCG GGTCGAATGG
CGGGAAACCG GCAACGAGCT GGGCGCGATG CTCGCCGAAG CGCAGTGGAT CGCCCGCCTG
CGTCCGTCGC ACAACCGGCG TCCCGCGGCC GACAAAGCCC GTGCGGGCAA CGCGGGCTGG
CCGTTCGACG GCGCGGTCGC ATTCGAAGCC GGCGACGAGC GCCGCCTGTT TCACGTGATC
GACGGGTGGC GCTATCTCGG GGCGGCCGAA TCACTCGACG CGGCCATGCG GCTCGCGGCC
GACGGCCTGG ACGGTGCGTA CGAACCCCAT ACCCATCGCC TGCTGCAGAC TCATCTCGCG
CGCGGCCTGC AACTGATTCC GCTCGCGGCG CTCACGCCAG CCGACTGA
|
|---|
| Protein sequence | MSDSCPSDPA CEQPLVFVDL ETTGGSSAEH RITEIGVVEI GPLGVSTWTT LVNPGQSIPP
FIQQLTGISD DMVRDAPSFA SLAPTLFERL DGKLFVAHNA SFDRGFLRAE FERAGIAFNP
DVLCTVRLSR ALFPREARHG LDALIERHGL VPAARHRALA DADLLWQFWR QLHEIVPLER
LRDQIARTTR HFRLAGGMTE AWLDTAPAGC GVYALFGEGD EALYVGRSVR VRQRLRALLT
GERRSSKEMR LAQQVRRVEW RETGNELGAM LAEAQWIARL RPSHNRRPAA DKARAGNAGW
PFDGAVAFEA GDERRLFHVI DGWRYLGAAE SLDAAMRLAA DGLDGAYEPH THRLLQTHLA
RGLQLIPLAA LTPAD
|
|---|
| |