Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0677 |
Symbol | tolB |
ID | 4308554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 757356 |
End bp | 758651 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638148472 |
Product | translocation protein TolB |
Protein accession | YP_772570 |
Protein GI | 115350731 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.814489 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGATTGA TGACGAAACT AGGTTTCAGG GCACTCGTGG CCTCGTGTCT GATTGCGGCC GGCGCCGCCG CTAACGCGCA GGTCAACGTG TTGATCACCG GCGTCGGTTC GACCCAGTTC CCCATCGCCA CCGCGAACTT CGCGAACGAG GCGGGCCTGC CGCAGCAGGT CACGTCGATC GTCCGCGCGG ATCTCGCGCG CAGCGGCAAA TTCACCAACA TCGATGCGGG CAGCACGCCC GTGCCCGAGA CCGCCTCGGT GGATCTCGGC GCATGGAAGG CCAAGGGCGC GAACGCGTTC GTCGCCGGCA GCGTGAACCG CGAGGCGAAC GGCCAGTACA AGGTGAACTT CATCCTGTAC GACACCGTGA AGCAGCAAAG CCTCGGCGGC CTGTCGCTGA CGGCCACCGA CACGACGCTG CGCACGGCCG GCCACAAGAT CGCCGACTAC ATCTACCAGA AACTGCTCGG CGTGCGCGGC GTGTTCGCCA CCCGCCTGTC GTATGTGATC AAGACGGGCA ACCGCTACCA ATTGCAGATC TCGGATTCGG ACGGCCAGAA CGCGCGCATC GCGCTGTCGA GCACCGAGCC GATCATCTCG CCGGCGTGGT CGCCGAGCGG CACGAAGGTC GCGTACGTGT CGTTCGAGCG CAAGAAGCCA ATCGTCTACA TCCACGACCT GCCGACCGGC CGCCGCTACA TGGTCTCCGA CCAGAAGGGC AACAACAGCG CGCCGGCGTG GTCGCCGGAC AGCAACACGC TCGCCGTCGC GCTGTCGCTG ACGGGCAATA CGCAAATCTA TACGGTCAAT GCGAACGGCG GCGGCCTGCG CCGTCTCACG CAGAGCAGCT CGATCGACAC CGAGCCGTAC TACTCGCCGG ACGGCCGCTG GATCTACTTC ACGAGCGATC GCGGCGGTGC GCCGCAGATC TACCGGATGC CCGCGCAGGG CGAAAGCGCC GGCGCGGCGC AACGCGTGAC CTTCACCGGC AGCTACAATA CGAGCCCGCG CATCAGCCCG GACGGCAAGC TGCTCGCTTA CATCTCCCGC ACGGGTGGGG GCTTCAAGCT GTACGTTCAG GATCTGCAAA CCGGCGCGGC GAACGCGATC ACGAATACCA ATCGTGACGA ATCGCCGAGC TTCGCGGCAA ACGGCCAGTA CCTTCTCTAC GCTACCCAGT CGGGTGGTCG CAACGTGCTG GCAGCTGTGC CCTCCGACGG CAGCGCGCCG CCTCAGATCC TGTCCGTCCA GGGCGGCTCC GTTCGCGAGC CGTCGTGGGG GCCCTTCATG CAATGA
|
Protein sequence | MRLMTKLGFR ALVASCLIAA GAAANAQVNV LITGVGSTQF PIATANFANE AGLPQQVTSI VRADLARSGK FTNIDAGSTP VPETASVDLG AWKAKGANAF VAGSVNREAN GQYKVNFILY DTVKQQSLGG LSLTATDTTL RTAGHKIADY IYQKLLGVRG VFATRLSYVI KTGNRYQLQI SDSDGQNARI ALSSTEPIIS PAWSPSGTKV AYVSFERKKP IVYIHDLPTG RRYMVSDQKG NNSAPAWSPD SNTLAVALSL TGNTQIYTVN ANGGGLRRLT QSSSIDTEPY YSPDGRWIYF TSDRGGAPQI YRMPAQGESA GAAQRVTFTG SYNTSPRISP DGKLLAYISR TGGGFKLYVQ DLQTGAANAI TNTNRDESPS FAANGQYLLY ATQSGGRNVL AAVPSDGSAP PQILSVQGGS VREPSWGPFM Q
|
| |