Gene Bamb_0612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0612 
Symboltgt 
ID4311553 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp684417 
End bp685604 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content65% 
IMG OID638148406 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_772505 
Protein GI115350666 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.895388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAAG GTTCATCCCA CGATACGCAC GCGCCCGTGC AAGAGCGCCC GGCCAACGGG 
CTCGAATTCG AACTGCTGAC GACCGACGGC CATGCACGCC GCGGCCGCGT GAAGCTCAAC
CACGGCGTGG TCGAGACGCC GATCTTCATG CCGGTCGGCA CGTACGGCAC CGTGAAGGCG
ATCCAGCCGC GCGAGCTGCA CGAGATCAAG GCCCAGATCA TCCTCGGCAA CACGTTCCAC
CTGTGGCTGC GCCCGGGCCT CGACACGATC GATGCGCATG GCGGCCTGCA CGGCTTCATG
GGCTGGAACA AGCCGATCCT GACCGACTCG GGCGGCTTCC AGGTGTTCTC GCTCGGCGAC
CTGCGCAAGA TCACCGAGGA CGGCGTCACG TTCGCGTCGC CGATCAACGG CGACAAGCTG
TTCCTGTCGC CGGAAGTGTC GATGCAGATC CAGAAGGTGC TGAACTCCGA CATCGTGATG
CAGTTCGACG AATGCACGCC GTACGCGACC AACGGCGTGC CGACGACGCA CAAGGAAGCG
GCCGACTCGA TGCGCATGTC GCTGCGCTGG GCGAAGCGCT CGCTCGACGA GTTCGACCGG
CTCGGCAACC CGAACGCCCT CTTCGGGATC GTCCAGGGCG GGATGTTCGA GGATCTGCGC
GACGAATCGC TCGCGGGGCT GTCCGAGCTC GGCTTCCACG GCCTCGCGAT CGGCGGGCTA
TCGGTCGGCG AGCCGAAGGA AGACATGATG CGCGTGCTGC GGCACGTCGG CCCGAAGCTG
CCGGCCAACA AGCCGCACTA CCTGATGGGC GTCGGCACGC CGGAAGACCT GGTCGAGGGC
GTCGCAAACG GCATCGACAT GTTCGACTGC GTGATGCCGA CCCGCAACGC GCGCAACGGC
TGGCTGTTCA CGCGCTTTGG CGACGTGAAG ATCCGCAACG CGACGCACAA GAACTCGCTG
AAGCCGCTCG ATGCGAGCTG CGGCTGCTAC ACGTGCCAGA ACTTCTCGCG CGGCTACCTG
CATCACCTGC ACCGTGTCGG CGAAATCCTC GGCGCGCAGC TCAACACGAT CCACAACCTG
CACTACTACC TGCAGCTGAT GGGCGAGATC CGCGACGCGA TCGAAACCCA TACGTTCGAC
GCGTTCCGGC AGCGCTTCGC GGAGGATCGT GCGAGAGGGG TCGACTGA
 
Protein sequence
MTEGSSHDTH APVQERPANG LEFELLTTDG HARRGRVKLN HGVVETPIFM PVGTYGTVKA 
IQPRELHEIK AQIILGNTFH LWLRPGLDTI DAHGGLHGFM GWNKPILTDS GGFQVFSLGD
LRKITEDGVT FASPINGDKL FLSPEVSMQI QKVLNSDIVM QFDECTPYAT NGVPTTHKEA
ADSMRMSLRW AKRSLDEFDR LGNPNALFGI VQGGMFEDLR DESLAGLSEL GFHGLAIGGL
SVGEPKEDMM RVLRHVGPKL PANKPHYLMG VGTPEDLVEG VANGIDMFDC VMPTRNARNG
WLFTRFGDVK IRNATHKNSL KPLDASCGCY TCQNFSRGYL HHLHRVGEIL GAQLNTIHNL
HYYLQLMGEI RDAIETHTFD AFRQRFAEDR ARGVD