| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0481 |
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| Symbol | |
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| ID | 4308620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 544523 |
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| End bp | 545767 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638148274 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_772374 |
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| Protein GI | 115350535 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00626406 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCGGC CACCTGCCTC CACCGACGCA TCGCCCGCCG ACCCGCCCCA TTCGCTCGAT
GCGGCGCAAC TCGACGACTC GCCCGCCGTA CGGCTGCTGA CCGACACGCT TCATGCCGCC
CGCGTGCGCG ACGCGTCCGA CATCCACGTC GAACCATTCG AAGCAGGCTG GCGCATTCGC
CTGCGCATCG ACGGCGTCCT GCATGAACAC GCGCGACCGC CCGTCCATCT GCGCGACGCG
CTCGTGACGC GCATCAAGGT GCTCGCACGC ATGGACATCG CCGAGCGCCG GCTTCCGCAG
GACGGCCGGC TGCGCATCGC GGTCGACGCA GGCCTGCGAG GCGATTACCG GGTCAGTTCG
CTGCCCACGC TGTTCGGCGA GAAACTCGTG TTGCGCCGCC TCGAAACGCT GCCGCCCGAC
CTCACGCTCG CGCGCCTCGG CTTCGACGCG CGACAGGCCG CGGCGATGGA GGCCGCGATA
CGCGCGCCGC ACGGTCTCGT GCTCGTCACC GGCCCGACCG GCAGCGGCAA GACGCTGTCG
CTCTACTGCG CGCTGCAGAT GCTCGATCGC GACGCGCACA ACGTCTGCAC GGTCGAGGAT
CCTGCCGAGA TTCAGCTCGA CGGCATCAAC CAGGTCGGCG TGGTGGAGAA AGCCGGGCTG
ACCTTCGCCA CGGCGCTGCG CGCGCTGCTG CGGCAGGATC CGGACGTCAT CATGGTCGGT
GAGATTCGCG ATGCGGAGAC GGCCGACGTT GCGATCAAGG CCGCGCAGAC CGGGCACCTC
GTGCTGTCGA CGCTGCATAC GAACGATGCG CCGGCCGCTG TCGCGCGACT GCTCGATATC
GGCGTCGCGC CGTACAACCT GGCCGCCGCG TTGCGCCTCG TCACCGCGCA GCGGCTCGTG
CGGCGTCTGT GCGTGAGCTG CCGCACGCGT TCGGACGCGC CGGCGCACGC GCTGCGCGAC
GCGGGCTGCG ATCCGGCGGC ACTGGCATCC GGATGGCGCC CGTTCGTCGC ACGCGGCTGT
GCCGCCTGTC ACGGTATCGG TTATCGAGGC CGCATCGGCC TGCATCAGAC GATGCCGGTT
TCACCGGAGA TGGCCGAACG CATCGTCGCG CGCGCAAGCG TCGGTGCGCT CACGCAATGC
GCGGCGACCG AAGGCGTGCG CAGTCTGCGC GACGCGGCAC TCGCGCACGT TCGCGACGGC
ACGACGAGCG TCGCGGAAGC CCTGGCCGCG ACGCCCGACG CGTGA
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| Protein sequence | MQRPPASTDA SPADPPHSLD AAQLDDSPAV RLLTDTLHAA RVRDASDIHV EPFEAGWRIR
LRIDGVLHEH ARPPVHLRDA LVTRIKVLAR MDIAERRLPQ DGRLRIAVDA GLRGDYRVSS
LPTLFGEKLV LRRLETLPPD LTLARLGFDA RQAAAMEAAI RAPHGLVLVT GPTGSGKTLS
LYCALQMLDR DAHNVCTVED PAEIQLDGIN QVGVVEKAGL TFATALRALL RQDPDVIMVG
EIRDAETADV AIKAAQTGHL VLSTLHTNDA PAAVARLLDI GVAPYNLAAA LRLVTAQRLV
RRLCVSCRTR SDAPAHALRD AGCDPAALAS GWRPFVARGC AACHGIGYRG RIGLHQTMPV
SPEMAERIVA RASVGALTQC AATEGVRSLR DAALAHVRDG TTSVAEALAA TPDA
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