Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6772 |
Symbol | |
ID | 6181695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010553 |
Strand | - |
Start bp | 269193 |
End bp | 271331 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641685518 |
Product | type I secretion system ATPase |
Protein accession | YP_001812423 |
Protein GI | 172064773 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTCGTGA CTGCACGACC CGAAAACTTC GCCGCGGACC CAGGGCTCGG AGCGCTGGTG CTCATCGCGC GCGTTCATGG TATTGCCGCA GACGCTGCGC AGCTCCATCA TGCGGCGGCC CTCAAGAACG ACAGGTTTGA AGAAGGCGAT TTGATCCGGG CAGGTCGTTC ACTTGGTCTC AAGGTACGTG CGGTCACAGT GACCGAGGAT CGCCTCCCGA ACCTGCCGAT GCCGGCGCTT CTCCTCGACA ATAATGGCGA GCACTGTGTC CTGGCGGGAT GTGATCGGTC ACGAGCCTTA ATCCTCGAGT GCGGTGCGAC TGCCCCGACG GTCTCCACGC CAGCCGAAGC CGTGTCAAGA TCGAGCGGCA GAATCTTGCT TTTCGCATCC AGGGCGTCGC TTTCCGGCGA TCTCGCACGA TTCGACTTTT CGTGGTTTAT TCCAGCCGTC GTCAAGTATC GACGCCTGCT GCTCGAAGTG TTGGCGGTAT CGCTCATACT GCAAGCGTTC GGCCTCGTCT CGCCCCTGAT GTTCCAGGTG GTCATGGACA AGGTTCTAGT CAATCGAGCC TATTCGACGC TGAACATTGT CTCTCTCGCT CTCCTCGCGA GCGCGATCTT TGAGGTCCTC CTGACGGGGC TGCGAAACTA TGTTTTTGCG CATACAACCA ATCGCATCGA CGTAGAGTTG GGCGCAAAGC TCTTTCGTCA CCTCGTGACG CTTCCGCTCG CCTACTTCGA GGCGAGACGC GTCGGCGATA CGGTGGCCCG GGTTAGAGAA CTCGAGAACA TTCGGAACTT TCTGACAGGG CAAGCGCTGA CTGCAGCAAT CGATCTGGTT TTCTCGATCG TATTTCTTGG TGTGATGTGC CTGTACAGCG TTTGGTTGAC CTTGATTGTT GCCATCTCGC TGCCTGTCTA CGCGGGGATC TCAATGTTGC TGAATCCCAT CCTCCGCGAG CGCCTGAATC AGAAGTTCGG CCGCGGCGCC GACAACCAGT CCTTTCTCGT AGAAGCGATA TCCGGCGTCC AAACCGTGAA GGCGATGGCA CTGGAACCGC AATTCACACG CCGTTGGGAC AATCAGCTTG CTGCTTACGT CACCGCAAGC TTCCGCGTGA ACGCGTTGAG CAACGTAGGC CAGCAGCTGA TTCAATTGGT CGGCAAGTTG GTTACTGTTG CGACGTTGTT TCTCGGTGCA AAGCTCGTGA TCGACGGCAG ATTGACTGTC GGCGAGCTGG TTGCATTCAA CATGATGTCG CAACGCGTTG CAGCACCCGT ACTTCGATTG GCTCAACTGT GGCAGGATTT TCAACAGATC GGCATCTCAA TGATGCGCTT GGGTGACATC CTCAATTCGC GCACCGAACT ACCCCAAAGT CGCCAGGCGA TGCCCGCAAT TCGAGGCGAC GTTCAGTTTT CTGACATCCG ATTTAGGTAC CGCCCCGACG GACAACCCGT ACTCAATGGA GTGAGTCTTG TGATCCGCGC CGGGGAACTC ATCGGAATTG TGGGTCGATC TGGCTCGGGA AAGAGCACGC TGACTAAACT GCTGCAACGG CTCTATGTGC CTGAGCACGG ACGCATAACG ATCGACGGAC ATGATCTTGC GTTAGCCGAT CCGGCATGGT TGCGTCGTCA GATTGGCGTC GTGCTTCAAG AGAACTTCCT CTTTAATCGG TCCATTCGCG ACAACATTGC GGCGACCGAT CCGGGCGCGT CCTTGGACAC TGTGATTCAA GCGGCGAAAC TCGCCGGCGC GCACGAGTTC ATCAGCGAGT TTCCGGAGGG GTACGACACA ACGGTGGGTG AACATGGCTC AACGCTTTCG GGTGGCCAGC GGCAGCGCAT CGCTATCGCG CGCGCCCTCT TGACCAATCC CAGGATCTTG ATCTTTGACG AGGCGACCAG TGCACTCGAC TTCGAGACCG AACGGGTTAT CCAAAATAAC ATGCAGGCGA TATGCCGCGG TCGTACGGTG ATCGTCATCG CACATCGACT GAGCGCCGTA CGTCACGCAC ATCGTATCGT CGCGATGGAT AAGGGCCTCA TCGTGGAGCA CGGCAGTCAC GACGAACTGA TGACTGTCGG CGGTTACTAC GCGCACTTAG TATCCTTGCA GGACCGGCAG CCGATATGA
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Protein sequence | MLVTARPENF AADPGLGALV LIARVHGIAA DAAQLHHAAA LKNDRFEEGD LIRAGRSLGL KVRAVTVTED RLPNLPMPAL LLDNNGEHCV LAGCDRSRAL ILECGATAPT VSTPAEAVSR SSGRILLFAS RASLSGDLAR FDFSWFIPAV VKYRRLLLEV LAVSLILQAF GLVSPLMFQV VMDKVLVNRA YSTLNIVSLA LLASAIFEVL LTGLRNYVFA HTTNRIDVEL GAKLFRHLVT LPLAYFEARR VGDTVARVRE LENIRNFLTG QALTAAIDLV FSIVFLGVMC LYSVWLTLIV AISLPVYAGI SMLLNPILRE RLNQKFGRGA DNQSFLVEAI SGVQTVKAMA LEPQFTRRWD NQLAAYVTAS FRVNALSNVG QQLIQLVGKL VTVATLFLGA KLVIDGRLTV GELVAFNMMS QRVAAPVLRL AQLWQDFQQI GISMMRLGDI LNSRTELPQS RQAMPAIRGD VQFSDIRFRY RPDGQPVLNG VSLVIRAGEL IGIVGRSGSG KSTLTKLLQR LYVPEHGRIT IDGHDLALAD PAWLRRQIGV VLQENFLFNR SIRDNIAATD PGASLDTVIQ AAKLAGAHEF ISEFPEGYDT TVGEHGSTLS GGQRQRIAIA RALLTNPRIL IFDEATSALD FETERVIQNN MQAICRGRTV IVIAHRLSAV RHAHRIVAMD KGLIVEHGSH DELMTVGGYY AHLVSLQDRQ PI
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