| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6628 |
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| Symbol | |
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| ID | 6181721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 120015 |
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| End bp | 121781 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641685388 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001812293 |
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| Protein GI | 172064643 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00587879 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAACCATC CGCAGCATCC GAGTATCGAT CCTGACGACG TGGACAATCC GACCGATATC
CTGATTCCGC TGTTTCCGCC ATTCGTGGCA CTGCTCAATC GTGCTGCCGA TGCATCGGCA
CACGGCGAGT CGACTTCGCG TCAGCTCTGG CTCGATGCCG CAGCACACCT TCATGCGGTC
GATGTGGGCG CACTCGTACA ACTGACGCTG GAATTTTTGA ATCGACGGCG AATGCTCGAA
GCGGTGGAGC TCGCCCGATG TGCGGCTCAT ATATATCGGG ACGTTGCGAC GCAGTTTAGT
CACGGTTACG CCCTGCAAAT GGTCGGCCGT CATGCAGATG CCATCGTACC GTATCGCGCC
GCGCTTGCAC TCGAGCCAGA CTGGCCGTCG TTGCGCAACA ATCTTGCTGT TGCGCTGCGT
CTGTCCGGGG GCGATCGTGA GGAGGAGTTC GCGTTACTTG AAGCGACTGT CCATGCTAAT
TCGGACGACG TGCAAGCCTG GATTAACCTC GTCGTGACAT ATTTGGCGCG GTACAACCTC
GATGGCGCAC TCGCCAGCGC GGCTCGGCTC GCCGAGATTG CGCCCGACAA CGCACTTGCG
ATGAACAACA TTGCAACAGC CATGAAGGAA GCGCAACGCT GGGATGATGC TGAACACTAT
GCGACGCGCG CGTACGAACT GGCTCCCGAC GACGCATCGT ATCAATTTAA TCTTGCGATC
ATTCAGCTTG TGAAGGAGAA TTATACGGCC GGCTGGAAAG GGCATGATGC GCGCTGGGAG
GGATCCGGCG AGCTACGTGG CAAGTTGCCC GTGTTGCCGG GCCCGCGCTG GCGGGGCGAG
TCACTGAAGG GCAAAACGTT GCTTGTGTGG GGCGAGCAGG GGTTCGGCGA CGTGCTGCAA
TTCTGCCGTT TCATTGTGCC GCTCGCCACG CGCGTGCATC GGGCAGGCGG CAAGCTTGCA
TGGAACACGT TCCCGCAGGT GGGAACCTTG CTGCAGCGCA GCCTAGGGGC GCATGCGGAC
GTATTCAGCG CGGGAGGCTA CGTCCATGCA CTGCCCGCAT TCGACTATGA AATGCCGCTC
ATGGAATTGC CATTGATGCT CGGTATGGAA GTAGACACAC TTACGTCATC GGTCCCCTAT
CTGCATGCTG ACTCACGTGC ATGCGACGCA TGGCGTGCGC GGCTCGTGGG CGATGGAAGT
CACGCGCGGC TGAAAGTCGG GCTCGTGTGG ACGGGCAGCG TCGGACATCA GCGTAATCCG
TTCCGCAGCG TCGGGCTCGA GCGTTATGCT CAGGCGTTTG GCGGGCTCGA CGGGGTCTTG
TTCTATTCGT TGCAACCCGA TCGCCAAGTT GAAGTTGCCG CTGCCCGTCA GGCGGGTTTC
ATGATCGAAG ACTATACCGA TGAGCTGATG AGCTTCGATG ACACGGCCGC GTTCATCGCC
GCCCTGGATC TCGTGATCAC CGTGTGCACG TCGGTCGCGC ATCTGGCTGG TGCGCTCGGT
GCCCGCACGT GGGTGCTGCT CGACGTGAAT CCATATTGGC CGTGGTTGCT TGAGCGACGC
GACAGCCCGT GGTATTCGAG CGCAACGCTC TACCGTCAGT CGACGTTCGG AGAGTGGGCG
CCGGTCATGG AGGACGTCGC GCGGGATTTA CGCAAGCTGG CTGAACAGAC CAAACAGGCG
AATTCCGAGC GTAAGCAACC GGCCACCGCC GCCAAACCTC GCAAATCGTC TCGTAAGGCA
AGCAAATCTG GCCCACCGAG TGAATGA
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| Protein sequence | MNHPQHPSID PDDVDNPTDI LIPLFPPFVA LLNRAADASA HGESTSRQLW LDAAAHLHAV
DVGALVQLTL EFLNRRRMLE AVELARCAAH IYRDVATQFS HGYALQMVGR HADAIVPYRA
ALALEPDWPS LRNNLAVALR LSGGDREEEF ALLEATVHAN SDDVQAWINL VVTYLARYNL
DGALASAARL AEIAPDNALA MNNIATAMKE AQRWDDAEHY ATRAYELAPD DASYQFNLAI
IQLVKENYTA GWKGHDARWE GSGELRGKLP VLPGPRWRGE SLKGKTLLVW GEQGFGDVLQ
FCRFIVPLAT RVHRAGGKLA WNTFPQVGTL LQRSLGAHAD VFSAGGYVHA LPAFDYEMPL
MELPLMLGME VDTLTSSVPY LHADSRACDA WRARLVGDGS HARLKVGLVW TGSVGHQRNP
FRSVGLERYA QAFGGLDGVL FYSLQPDRQV EVAAARQAGF MIEDYTDELM SFDDTAAFIA
ALDLVITVCT SVAHLAGALG ARTWVLLDVN PYWPWLLERR DSPWYSSATL YRQSTFGEWA
PVMEDVARDL RKLAEQTKQA NSERKQPATA AKPRKSSRKA SKSGPPSE
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