Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6506 |
Symbol | |
ID | 6181542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010553 |
Strand | - |
Start bp | 4991 |
End bp | 7468 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641685275 |
Product | type IV secretory pathway VirB4 components-like protein |
Protein accession | YP_001812180 |
Protein GI | 172064530 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAGTT CGAAAATCAA GCGCGGCCCG ATGCAGGAGA TCGCGCCGTG GGCGACGATG GTCACCCCTG AGCTTGTCCT GGACAAGGAT GGGTCGCTGC TGACGGTGTT CACGTTCGAC GGAATCGACG CCGACTCGCC GAACAAGGCG GATATTTCGG CAGCGCGAGA CAACCTCGAT CATGCGTGCA AGAACTTCGA CCACCGGGTA ACGGCGTGGT GGCGACTGTC GCATCGGCGT GTCCGTGGGG ACATACAGGG GGGATTCTCG TCCCGGATCG ACGAGCGCAT CGATGCCATC AACCGCGCAC ACGTCAGCAG CGGCAAGTTT TTCCGCAACA CCCATTCGCT GGCGCTGGCT TACACGCCCG AGACCGGGAT CAACAAGATC TTCGAGAAGG TCGCGTACCA CATGACGGTC GGCGGCAAGT CGGTGCCGGT CGCTCTGTGG GAAACCCTCC GGGACGTGCT TTTTGCACGC AGCGCTTTCG CGTTCGACAT GGAGCGGATT ACGTCGGACA TCAAGCGGTT CGAGGGGGTT ATCGACGCTT TCAAGGGCGG CGTGACGCGC CTCAAGATGA AGCGCCTGCA ACTGCAGAAC GTCATGGCGT TCCTGCACCA GACCGCGAAC CCCTCCGTTC CGCCGCGCCG CGTTCGCTAC CCGGTCACGA TGCTGGACAC CCATTTGACC GAGACGTTCG TGACGTACGG CACGGAGCAC CTGATGTTCG AGTCAGCGTA CGGAAAGCGG TACGCGAAGA TCGTGTCCGT GAAGGAATGG ATGGGGTTTC AGGAGGCCGC CCTCGATGTC CTGGCGGACG TCGACGCCGA GCTCGACATC TGCGTCATGT TCCGCTTCCT GTCGAGCCAC AAGGCGCGGG TCTATATCGA GAAGATGCGC AAGTTCTACA AGGTCGCGGC GTTCAACCCG CTTGCGATCC TGAAGAGCTT CTTCTCGAAG GATGAAAAGC AGGAGGCGGA AAAGAACGAC AAGGGGCGTG AAATCCTTGC CGAAGAGGCT GAAAATGCAC TGGCGAAACT GGTGGCCGAT GGGACGCAGT ATGGGTTCGC CAACATCTCG GTGGTCGTCT ATGGAGACAC GGTCGAGGAG TGCGACGACA ACACGCGCGA AGTCGTCGGC CGCATCGGCA ATGCGGGGTT TGGCGTCATC CTGGAGACCC GCAACATCCC GGCGGCGTGG GCGACCACGT TGCCCGGACG GTGGGATCAG CAAAAACGCC TGCAGTTCGT CGAAACGCCG TGCGTTTCCG ACATTGCGCC GTTGCGCGGG GTCGAGGAAG GCAGTCCGAT CAACCAGTGG TTGACCCAAC AGACCGGCGA GCAGACTGGG CCGCTTACCG TTCTGCCCAC CCGTCACCGA ACGCTGCAGC GCGTGACGCT GCACCAACCG GGCGGCAAGT CGCACACGCT CGTGGTCGGG CCGATCGGGG CGGGCAAGAC GATCTTCCTG AACTTTCTCG TGTCGCAGTC CGGGCGCCAC AACCCGCGCC GGATCAAGTT CGACAAGAAC CGGTCGACAC GGATTCCGAC GGTGATGGCC AACGGTCGCT TTGTCGATGC GACTGGGCGG TTCGGCGCGG CCACGCCGGT CAACCCGCTT TCGCTGCTGG CGGATAAGCG GCACTGGACC TACGTGGCGG AATGGGTGCA GATGGCGATC GAGGATGAGG ACTTCCACTG CACGCCGCAG CAGCAGACGG ATATCTATCA GGCTGTCGCA ACGCTCGGCG GCGGCGAGTA CGACCGCGAA CTCTGGACGC TGTCGATGCT GAACACGCTG TTGCCAATGG AGCTGCGCGA GCGCCTCCAG ATCTGGACGC AAGGTGAGAA GAACGGTCGC TTCTTTGATC ACGTCGAGGA TGCGTTCTCG CTGTCGGACG ATATCGCGAT CGAGATGGGC GACCTGTTCG AGAAATACCC GGTCGCCGCC GCGCTATTCA TGGACTACGC GTTCTATCGC ATCTCGCAAT GGCTGGACGG GAAGCGCTTC ACGATCATCG AAGTCGAAGA GTGTGGGTTC TTCTTCCAGT ATGAACGCTT CTATGCCCGC CTGGAACTGT GGGCCGTCAC GATCCGCGGC TTGAACGGGA CGCTCGTGAT GGCGACCCAA TCGCTCGGGC AGCTCGCCCG CGTGAAGAAC TTCGAGATTC TCAAGGAGAA CATCCCGAAC TTCTTCTTCC TGCCGAACCG GGACGCACGC AACAACAAGC ACCTGTATCG GGATGTGTTC GGCCTGACCG ACGACCTGAT CGACATGATT GCCGACGCGG TGCCCAACCG CGATTACCTG TGGGTGACCC CTGACCACGC ACGGATGCTC CAGGCGCAAT TCCCGAAAGA AGCTCTCGCC GTGTTGCGCG CCGACGGCGC GGCCCAACGG GTGCTCGACA AACACCACGA CTCCGGCTCG CCGCACTGGC GTGAAGAGTA CCTCCAAGAA ATGATGACTC TCGACTGA
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Protein sequence | MLSSKIKRGP MQEIAPWATM VTPELVLDKD GSLLTVFTFD GIDADSPNKA DISAARDNLD HACKNFDHRV TAWWRLSHRR VRGDIQGGFS SRIDERIDAI NRAHVSSGKF FRNTHSLALA YTPETGINKI FEKVAYHMTV GGKSVPVALW ETLRDVLFAR SAFAFDMERI TSDIKRFEGV IDAFKGGVTR LKMKRLQLQN VMAFLHQTAN PSVPPRRVRY PVTMLDTHLT ETFVTYGTEH LMFESAYGKR YAKIVSVKEW MGFQEAALDV LADVDAELDI CVMFRFLSSH KARVYIEKMR KFYKVAAFNP LAILKSFFSK DEKQEAEKND KGREILAEEA ENALAKLVAD GTQYGFANIS VVVYGDTVEE CDDNTREVVG RIGNAGFGVI LETRNIPAAW ATTLPGRWDQ QKRLQFVETP CVSDIAPLRG VEEGSPINQW LTQQTGEQTG PLTVLPTRHR TLQRVTLHQP GGKSHTLVVG PIGAGKTIFL NFLVSQSGRH NPRRIKFDKN RSTRIPTVMA NGRFVDATGR FGAATPVNPL SLLADKRHWT YVAEWVQMAI EDEDFHCTPQ QQTDIYQAVA TLGGGEYDRE LWTLSMLNTL LPMELRERLQ IWTQGEKNGR FFDHVEDAFS LSDDIAIEMG DLFEKYPVAA ALFMDYAFYR ISQWLDGKRF TIIEVEECGF FFQYERFYAR LELWAVTIRG LNGTLVMATQ SLGQLARVKN FEILKENIPN FFFLPNRDAR NNKHLYRDVF GLTDDLIDMI ADAVPNRDYL WVTPDHARML QAQFPKEALA VLRADGAAQR VLDKHHDSGS PHWREEYLQE MMTLD
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