| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6374 |
|---|
| Symbol | |
|---|
| ID | 6182139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 979032 |
|---|
| End bp | 979973 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641689498 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001816357 |
|---|
| Protein GI | 172065645 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.436439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAATCA ACTTCGATCT GACCGACTTG CAGGCGTTTC GCGCGGTGGT GGAACTCGGC
AGCTTCCGGA AGGCCGCCGA CGCGATCAGC ATTTCGCAAC CCGCGTTGAG TCGGCGGATC
GACAAACTCG AGGAAGCGCT GGGCGTGCGC CTGTTCGAGC GCACCACGCG CAGCGTCACG
CTGACCACAG TCGGGCGCGT ATTCGCGCCG AGCGCCGAGC AGCTGCTGGA CGATCTCGAC
GTCGCGCTGC TCGGCATCCG CGACGTTTCA TCGAGCCGCC TCGGTCATGT GACGATCGCG
TGCGTGCCGT CGGTGGCCTA CTACTTCTTG CCCAACGTGA TCGCGAGCTA TCATCGCCGC
TTTCCGCGCA TCCGCGTCAA GCTGCTGGAT GCCGGTGCGA ACGAGGTGCT GAGCGCCGTG
ATCAGCGGTG AGGCCGATTT CGGCGTGAGC TTCATGGGCA GCCAGGAGCC CGAGATCGAC
TTCAAGCTGC TGCTGCAGGA GCGTTTCGTC GCCGCATGCC GGCGCGACCA TCCGCTCGCG
CGCAAGAAGC GCGTGACCTG GAACGAGCTT TACGAGTACG AGTATGTGTC GGTGGACAAG
ACTTCCGGCA ACCGCCTGTT GCTCGACCAG GCGCTGACGA CCGTCGCGCC GCGTGCGCCG
AGCGTGTGCG AGACGCGCCA CGTGACGACG CTGCTCGGCT TGATCGAAGC CGGGCTCGGC
GTCGCCGCGG TGCCGTCGAT GGCGATGCCC GGACACGACC ATCCGCTGCT CACGAGCGTG
CCGCTCGTCG AACCGGTGGT CAAGCGCCGG GTCGGCATCG TGAAACGGCG CGGACGCCCG
CTGACACCGG CCGCGGAGGA GTTTCACCGC GCGATCGTCG ACGCCAAACG TGCCGGCGCC
GGCGCGGGCA CCGGTGCCGC ACGCAGCGAC GGATCGACAT GA
|
|---|
| Protein sequence | MGINFDLTDL QAFRAVVELG SFRKAADAIS ISQPALSRRI DKLEEALGVR LFERTTRSVT
LTTVGRVFAP SAEQLLDDLD VALLGIRDVS SSRLGHVTIA CVPSVAYYFL PNVIASYHRR
FPRIRVKLLD AGANEVLSAV ISGEADFGVS FMGSQEPEID FKLLLQERFV AACRRDHPLA
RKKRVTWNEL YEYEYVSVDK TSGNRLLLDQ ALTTVAPRAP SVCETRHVTT LLGLIEAGLG
VAAVPSMAMP GHDHPLLTSV PLVEPVVKRR VGIVKRRGRP LTPAAEEFHR AIVDAKRAGA
GAGTGAARSD GST
|
|---|
| |