| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6346 |
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| Symbol | |
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| ID | 6182605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 949942 |
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| End bp | 951381 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641689472 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001816331 |
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| Protein GI | 172065619 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0651972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.700008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTCA CGCTTGCGCT CCAGATGCGA CAGCATCTGG CACTCACACC GAGGCTGCAG
CAATCGCTGC GTCTGCTGCA GCTGTCTTCG CTCGAATTCC AGCAGGAATT GCGGCAGGCG
CTCGACTCGA ATCCGTTTCT CGAAGATGGC CAGGCCGACG ACGAAGCCGT CGCCGAGGCC
GACGCGCCCG ACCATCCGGC CGAGGCCGCC GCGCCCGAGC CCGTGCCCGA TGGCGACGAC
GTGCGCCCGC CGGACGGCGA CGTGTCATAC ACGGCCGCGC CGGCGCCGCG CACCACGGGC
CGGCAGGGCG ACGACGTCAG CGACCTGTCG CCCGGCGAAT GGATGGCGGC CGAGCCGTCG
CTGCACCAGC AACTGCACGA CGCGCTGCGT CTCTATCCGC TGAACCGGCG CGACCGCGAG
GCCGCGCGCA TCGTGATCGA CGCGCTCGAC GAGGACGGCT ACCTGCGTCA GGAGCTGTCC
GAGCTGCTGG TCGCGGCCGA TCCCGCGCTG CTGCTGTCGG AACAGGATCT CGCGGTCGCG
CTGCGGCTCG TGCAGATGCT CGATCGCCCA GGGATCGCCG CACGGTCGCT TTCTGAATGC
CTGCTGCTGC AGCTCGACGC GATTCCCGCC GGCACGCCGG CGCTCGCGGA AGCGAAGGTG
ATCGCGCGCG AACATCTCGA ACGGCTCGCG CGGCGGGAGA CCGCCGAGAT CCAGCGGCGC
GTCGGCTGCA GCCAGGCGAC GATGCAGGCC GCGTGCGCAC TGGTGCGCGG GCTCGATCCG
CGCCCCGGCA ATCACTACGG CAGCACGCGC GGCGACTATG TGGTGCCCGA CGTGATCGTG
CGCCAGGTGC GCGACGAATG GATCGTGACG ATCAACCCGG CCGTGCTGCC GCGCGCGCGA
TTGCACGAAC GCTATGCGAC GTTGTTCGCG CAGTCGAGCG GCGAGCGCGA TTCGCCGCTC
GGCCAGCAGT TGCAGGAGGC GCGCTGGCTG ATCCGCAACG TGCAGAAGCG CTTCGACACG
ATCCAGCGCG TCGGCGAATG CATCGTCGCG CGGCAGCGCG ACTTCTTCCG TTACGGCGAG
ATTGCGATGA AGCCGCTCGT GCTGCGCGAT ATCGCGGAAG AGCTCGACCT GCACGAATCG
ACCGTGTCGC GTGCGACGGG CAACAAGTAC ATGGCCACGC CGCACGGCAC GTTCGAGTTC
AAGCACTTCT TCCCGCGCAA GCTGGAGGCG GCCGGCAAGG GCGTGTGCTC GGCATCGGCC
GCGAAGGTGC TGATCCGCGA CATGATCGCG GCCGAGCGCC ATACCGACCC GCTGTCCGAT
GTCGCGCTCG CGCAGAACCT CGCGGGGCGC GGCATCCTTC TTGCGCGTCG TACGGTGACC
AAGTATCGCC AGGCCATGAA GATCCCGCCG GCCGAATTGC GTCGGCGCGA CGCCGCCTGA
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| Protein sequence | MSVTLALQMR QHLALTPRLQ QSLRLLQLSS LEFQQELRQA LDSNPFLEDG QADDEAVAEA
DAPDHPAEAA APEPVPDGDD VRPPDGDVSY TAAPAPRTTG RQGDDVSDLS PGEWMAAEPS
LHQQLHDALR LYPLNRRDRE AARIVIDALD EDGYLRQELS ELLVAADPAL LLSEQDLAVA
LRLVQMLDRP GIAARSLSEC LLLQLDAIPA GTPALAEAKV IAREHLERLA RRETAEIQRR
VGCSQATMQA ACALVRGLDP RPGNHYGSTR GDYVVPDVIV RQVRDEWIVT INPAVLPRAR
LHERYATLFA QSSGERDSPL GQQLQEARWL IRNVQKRFDT IQRVGECIVA RQRDFFRYGE
IAMKPLVLRD IAEELDLHES TVSRATGNKY MATPHGTFEF KHFFPRKLEA AGKGVCSASA
AKVLIRDMIA AERHTDPLSD VALAQNLAGR GILLARRTVT KYRQAMKIPP AELRRRDAA
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