Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6055 |
Symbol | |
ID | 6182074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | + |
Start bp | 618429 |
End bp | 619097 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641689185 |
Product | haloacid dehalogenase, type II |
Protein accession | YP_001816044 |
Protein GI | 172065332 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCAGT TTGAACCGAA GTACATCACC TTCGACTGCT ACGGCACGCT GACCCATTTC CGGATGGCCG AGACGGCGCG CGAAATCTAT GCGGATCGGT TGTCGCCGGC CACGATGGAG GCCTTCGTGC GCGCGTTCGC CGCCTATCGG CTCGACGAGG TGCTCGGCGC GTGGAAGCCG TACCGCGACG TCGTCGTCAA CGCGGTCCGC CGCACGTGCG CACGGGTCGG CGTGAAGTTC GACGAAGCCG AGGCCGAGCT TTTCTATCAC GCGGTGCCGA CGTGGGGCCC GCACCCGGAC GTGCCGGCCG GGCTGTCGCG GCTGGCGTCG AAGTACAAGC TCGTGATCCT GTCGAACGCG ATGGACGACC AGATCATGAG CAACGTCGAC AAGCTCGGCG CACCGTTCCA TGCGGTGTTT ACCGCGCAGC AGGCGCAGTC GTACAAGCCG CGGATGCAGG GCTTCGAATA CATGTTCGAC AAGCTCGGCT GCAAGCCTGA GGACGTGCTG CACGTGTCGT CGAGCCTGCG CTACGACCTG ATGACGGCCG AGGATCTCGG GATCAAGCAC AAGGCGTTCG TGAACCGCGG CCACGAGCCG GGCACGCCGT TCTACAACTA TTACGAAGTG TCGGACATCG GCCAGCTGGC GACGCAGCTC GGGCTGTAA
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Protein sequence | MIQFEPKYIT FDCYGTLTHF RMAETAREIY ADRLSPATME AFVRAFAAYR LDEVLGAWKP YRDVVVNAVR RTCARVGVKF DEAEAELFYH AVPTWGPHPD VPAGLSRLAS KYKLVILSNA MDDQIMSNVD KLGAPFHAVF TAQQAQSYKP RMQGFEYMFD KLGCKPEDVL HVSSSLRYDL MTAEDLGIKH KAFVNRGHEP GTPFYNYYEV SDIGQLATQL GL
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