Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6020 |
Symbol | |
ID | 6181837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | + |
Start bp | 576946 |
End bp | 577740 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641689150 |
Product | extracellular solute-binding protein |
Protein accession | YP_001816009 |
Protein GI | 172065297 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT GGATGGCGGC GCTCGCGGTT GCGCTGACGG CGACGACGAT CGCGGGGGCC GCGCAGGCGG GCGACTGGAC GGGCAAGGAG ATCCGCCTCG CGGTCGATCC GACCTACCCG CCGCTCGAAT ACAAGCTGCC AGACGGCACG CTGACCGGGT TCGGGATCGA CATCACGAAT GCGTTGTGCG CGGAGCTGCA TGCACGCTGC GTGTGGGTCG AGTCGAGTTT CGACGGGATG ATTCCCGGGC TGCTCGCGCG CAAGTTCGAC GTGATCGCCT CGTCGATGAC GATCACGCCG AAACGGATGC AGCAGATCGC GTTCACGAAC CGGATCTCGA ACGCGCCGGC GCGGCTGATC GCGCGCAAGG GTTCGCCGCT GCTGCCGACG GCCGCGTCGC TGAAGGGCAA GCGGGTCGGC GTCGAGCAGG GCTCCGCGCA GGCCGACTAT GCGGTCGCGA ACTGGCAGCC GGCCGGCGTG CAGATCGAGT CGTACCAGAA CCAGGGCCAG GTGTACGCCG ATCTCGTGAC GGGGCGGCTC GACGCGGCGT TCCAGGCGTC GATCGCGGCC AGCGACGGCT TCCTGAAGAA GCCGCAGGGC AAGGACTTCA TGTTCGTCGG CGCGGCGATC GACGACGCGA AGTACTTCGG GCAGGGCGAC GGCCTCGGGC TCCGCAAGCA GGACGCCGAC CTGCGCGACG CGTTCAACCG CGCGCTCGCG ACGATCCTCG CGAACGGCAC GTATCAGAAG ATCAACAAGA AGTATTTCGA CTTCGACATC TACGGCACGA AGTAA
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Protein sequence | MKQWMAALAV ALTATTIAGA AQAGDWTGKE IRLAVDPTYP PLEYKLPDGT LTGFGIDITN ALCAELHARC VWVESSFDGM IPGLLARKFD VIASSMTITP KRMQQIAFTN RISNAPARLI ARKGSPLLPT AASLKGKRVG VEQGSAQADY AVANWQPAGV QIESYQNQGQ VYADLVTGRL DAAFQASIAA SDGFLKKPQG KDFMFVGAAI DDAKYFGQGD GLGLRKQDAD LRDAFNRALA TILANGTYQK INKKYFDFDI YGTK
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