| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6002 |
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| Symbol | |
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| ID | 6181887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 555779 |
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| End bp | 557146 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641689132 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001815991 |
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| Protein GI | 172065279 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.661496 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTGC GCGAACAGAT GTCCTTGTAC CGGACGCAGC CGCAGGCGGC GGGCACCGAA
CCGGCAGGTG CGGCGCATTC GTCGGTACGC GACGCGTACC AGAAGCTGCG CCGTGAAATT
CACCTGACGG TGCTCGATCG CGTCGAGCTC GAGCGCCTGT CACGCCTGCC GCAGGAACAG
GTCCGGCAGG AAATCTCGTC GCTGATCTCG CGCATTCTCG ACGAGGAGCG GCTGCTCGCG
AACGACATCG AGCGGCGCCA GCTCGCGATC GACGTGTACG ACGAAATGTT CGGTTTCGGC
CCACTCGAGT CGCTGCTGCG CGACCCCGGC ATCTCCGACA TCCTCGTGAA CACGTACCGG
CAGGTCTACG TCGAGCGCAG CGGCCAGCTC GAGCTGACCG ACGTGACGTT CTACGACGAC
GCGCACCTGA TGAAGGTGAT CGAGAAGATC GTGTCGCGGG TCGGGCGGCG CATCGACGAA
TCGACCCCGA TGGTCGATGC GCGCCTGCCG GACGGCTCGC GCGTGAACGC GATCATTCCG
CCGTCGGCGA TCGACGGGCC GCTGATGTCG ATCCGGCGCT TCGCGGTCAA CCCGCTGAAG
ATGGACGACC TCGTGAGCTA CCAGAGCCTC ACGCCGCCGA TGGCGGAACT GCTCGACGCG
CTGGCCCACG CGAAAGTGAA CGTGCTCGTG TCGGGCGGCA CCGGCAGCGG CAAGACGACG
CTGCTCAACA TCCTGTCGGG CTTCATTCCA CGCTCGGAGC GGATCGTGAC GATCGAGGAT
GCGGCCGAGC TGCAACTGCA GCAACCGCAT GTGCTGCGGC TCGAAACGCG GCCGCCGAAC
ATCGAGGGCA AGGGCGAGAT CACGCAACGC ACACTCGTGC GCAATGCGCT GCGGATGCGG
CCGGACCGGA TCATTCTCGG CGAAGTGCGC GGCGCGGAAG CGCTCGACAT GCTCAATGCG
ATGAACACCG GCCACGAAGG CTCGCTCGCG ACGATCCACG CGAACACGCC GCGCGATGCG
CTCACGCGGC TCGAGAACAT GATCAGCGTC GGCGGCCTGA CGCTGCCGCC GAAGACGATG
CGCCAGCAGA TCGCGTCGGC GATCTCGGTG GTGGTCCAGG CGACGCGGCT CACCGACGGC
AAGCGCAAGA TCGTCAGCAT CCAGGAGCTG ACCGGGATGG AAGGCGACAT CATCAACATG
CAGGAGATCT TCACGTTCAA GCGCACCGGC ATGGATCGCG ACGGTACGGT GCGCGGACAC
TTCTGCGCGA CCGGCGTGCG GCCGAAGTTC GCCGAGCGGC TGCAGGCATT CGGCATCAAC
CTGCCGGATT CGCTGTACGA CCCGGCGCAG CGTTACGAGA CGAAGTGA
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| Protein sequence | MSLREQMSLY RTQPQAAGTE PAGAAHSSVR DAYQKLRREI HLTVLDRVEL ERLSRLPQEQ
VRQEISSLIS RILDEERLLA NDIERRQLAI DVYDEMFGFG PLESLLRDPG ISDILVNTYR
QVYVERSGQL ELTDVTFYDD AHLMKVIEKI VSRVGRRIDE STPMVDARLP DGSRVNAIIP
PSAIDGPLMS IRRFAVNPLK MDDLVSYQSL TPPMAELLDA LAHAKVNVLV SGGTGSGKTT
LLNILSGFIP RSERIVTIED AAELQLQQPH VLRLETRPPN IEGKGEITQR TLVRNALRMR
PDRIILGEVR GAEALDMLNA MNTGHEGSLA TIHANTPRDA LTRLENMISV GGLTLPPKTM
RQQIASAISV VVQATRLTDG KRKIVSIQEL TGMEGDIINM QEIFTFKRTG MDRDGTVRGH
FCATGVRPKF AERLQAFGIN LPDSLYDPAQ RYETK
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