| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6000 |
|---|
| Symbol | |
|---|
| ID | 6181885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 554087 |
|---|
| End bp | 554530 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641689130 |
|---|
| Product | TadE family protein |
|---|
| Protein accession | YP_001815989 |
|---|
| Protein GI | 172065277 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4961] Flp pilus assembly protein TadG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.196579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCGC GTCCCGCTCC GCCGTCGCGC CGTCGCGCCC AACGCGGCTC CACGATCGTC
GAATTCGCGC TGATCGCGTC GATCCTGATC ATGCTGCTGA TCGGCATCTT CGAATTCGGA
CGCGTGCTGT TTTACTGGAA CACGGCGAGC GAGGCCATCC GGCTCGGCGC CCGCACGGCG
ATCGTCTGCG ACGTGAACGC CGCCGGCGTC GTGAAGCGCG TGCGGTCGCT CATGCCGATC
CTGGCCAATT CGAACGTATC GGTGAGCTAC TCGCCGTCAG GCTGCGACGT GAGCTCCTGC
TCGTTCGTGA CCGTCAGCAT CAGCAATGTC ACCGTCAACA CGATGATCCC GATCGCGAAC
ATTGCGATCA CGATGCCGTC GTTCACCACG ACGCTGTCGC GGGAAAGCCT GAACTCCTCG
ACGGGCGGAA GCGCCTGTCA ATAA
|
|---|
| Protein sequence | MNPRPAPPSR RRAQRGSTIV EFALIASILI MLLIGIFEFG RVLFYWNTAS EAIRLGARTA
IVCDVNAAGV VKRVRSLMPI LANSNVSVSY SPSGCDVSSC SFVTVSISNV TVNTMIPIAN
IAITMPSFTT TLSRESLNSS TGGSACQ
|
|---|
| |