| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5907 |
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| Symbol | |
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| ID | 6182268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 447713 |
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| End bp | 449950 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641689038 |
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| Product | exopolysaccharide transport protein family |
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| Protein accession | YP_001815897 |
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| Protein GI | 172065185 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.459127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.402865 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAC CCTCCGCCCC GCCGCAGCAA ACCGCCGAAG ACGGCAGCGA GACCGATTTC
GTCGCGGTGC TCGACATCCT GCTGGAAAGC CGCTGGCTGA TCGCGGCCAT CACGTGTGTG
GTGCTGGCCG CCGGCCTCGC ATATGCGATT CTCGGCAAGC CCGTGTTCGA AGCAAACATC
ATGGTCCAGG TCGAGGACAG CCCCGACACG TCGGCCGCCA AGTCGTTGCT GGGCGATGTG
TCGTCGCTGT TCGACGTGAA GTCGTCGGCC GCTGCCGAAC AGCAGATCCT CGCGTCGCGA
CTGGTCGTCG AACGCGCGGT CGACAAGCTC AACCTGTTCA TCGATGCGTC GCCGAAGCGT
TTTCCGTTGA TCGGCGACTG GATCGCGCGC CATCGCGACG GCCTGTCCGA TCCCGGCTTG
GCCGGCTTTG GCGGCTATGC CTGGGGCCGC GAGCACATCG ACGTGCCGCG GTTCGACGTG
CCGCGCAAGA ACGAAGGCGA CGCGTTCACG CTGACGAGCC TCGGCGGCAA GCGCTATCGG
CTCGAAGGCG GTGATCTCGA CGCCGCGGTC GAGGGCATGG TCGGCATGCT CGAAACGTTC
CGCTCGCCGC GCGGCCCGAT CACGCTGCAG GTCGCGTCGA TCGCCGCGAA GCCCGGCGCT
GCCTTCGTGC TGGTGCGCAA CTCGCGGCTG AAGACGATCG AGGACATCCG CGACCGCCTC
AACGTGCAGG AGCGCGTGAA GCAATCGGAC GTCGTCGTCG CCAGCCTTCA GGATACCGAT
CCGAAATGGG TCAGCGACAC GATGAACGAG ATCGGTCGCC AGTACGTGCG GCAGAACATC
GAGCGGAAAT CGGCGGAGGC CGCGCAGTCG CTCGAATTCC TGACCGCGCA GCTGCCGCAG
CTCAAGCAGC AGCTGACCGA TTCCGAAGCA CGCCTGACGA AGCTGCGCAA CGAGCACGGC
ACGGTCGACC TCACCGAGGA AGCAAAACTC GCGCTGGCGC AGACCGCCGA CGCGAAGACA
CGCCTGCTTG AGCTGCAGCA GAAGCGGCAG GAGCTGATGT CGCGCTTCAC CGACCGGCAC
CCGAGCGTGG CCGTGATCGA CGAGCAGATC GCCGCGCTGA ACGGTTATCG CAGCACCGCC
GAGCAGCAGA TCCGGCGCCT GCCCGACCTG CAGCAGGAAA CCGTGCGGAT GATGCTCGAC
GTGAAGGTCA ACACGGACCT CTACACGGCG CTGCTGAACA ACATGCAGCA GCTGCAGCTC
GTGCAGGCCG GCAAGGTCGG CAACGTGCGC CTCGTCGATA CGGCGGCGGT GCCGGAAGTG
GCGGTGCGAC CGAAGAAGGT GCTCGTCGCG CTGGCGTCGC TGCTGCTCGG GCTGCTCGCC
GGATGCGGCA CCGCGATCGT CCGCTCGATG CTGTTCCACG GGATCTCCGA TCACAACGAG
ATCGAGCGCC GTCTCGGCCT CGCGGTGTAC GCGACGGTCC CGATCAGCGA CCATCAGCGC
GACCTGGCCG AGGAGGCCGC GCGCAAGAGC GGCCACAGGT CGATCCTGTC GATCGACTTC
CCGAACGAGC CGGCCGTCGA GTGCCTGCGC AGCCTGCGCA CCGCGTTGCA GTTCGCGATG
CTCGAGGCGA AGAACAACGT CGTGCTGATC GCCGGTCCGG CGCCGGGTGT CGGCAAGACC
TTTCTCTCGT CGAATCTCGC CGTCGTGATG GCGAGCGCCG GCAAGCGCGT GCTGCTGATC
GACGGCGACA TTCGCAAGGG CCGGCTGCAC GACTATCTCG GCTTTCCGCG CGGCCGCGGC
TTCACCGAGC TGATCGCCGG CGGTGCGCGC GTGGAGGACG TGATTCACCG CGAGGTGGTC
GACGGCCTCG ACTTCATCTC GACCGGCACG ATGCCGAAGA ATCCCGCGGA ACTGCTGCTG
AACCGCAATC TCGCGACGCT GGTCGGCGAA CTTTCGTCGC GCTACGACAT CGTCGTGATT
GACTCGGCGC CGGTGCTCGC GGTGCCCGAT ACCGGCATTC TCGGCGCGGT CGCCGGCACC
GCGCTGCTCG TCACGATGGC GGGCAAGACG AAGCTCGGCG AGATCGGCGA ATCCGCGAAG
CGCTTCGCGC AGAACGGCAT CCGCCTGAAC GGCGTGATCT TCAACGGTGT CAATCCGCGG
CTCGGACAGT ACGGGTACGG GTCGAAATAT GGCGGTTACC GCTATGTCGC CTACGAATAC
GGGGCGCAAG ATGCGTGA
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| Protein sequence | MTQPSAPPQQ TAEDGSETDF VAVLDILLES RWLIAAITCV VLAAGLAYAI LGKPVFEANI
MVQVEDSPDT SAAKSLLGDV SSLFDVKSSA AAEQQILASR LVVERAVDKL NLFIDASPKR
FPLIGDWIAR HRDGLSDPGL AGFGGYAWGR EHIDVPRFDV PRKNEGDAFT LTSLGGKRYR
LEGGDLDAAV EGMVGMLETF RSPRGPITLQ VASIAAKPGA AFVLVRNSRL KTIEDIRDRL
NVQERVKQSD VVVASLQDTD PKWVSDTMNE IGRQYVRQNI ERKSAEAAQS LEFLTAQLPQ
LKQQLTDSEA RLTKLRNEHG TVDLTEEAKL ALAQTADAKT RLLELQQKRQ ELMSRFTDRH
PSVAVIDEQI AALNGYRSTA EQQIRRLPDL QQETVRMMLD VKVNTDLYTA LLNNMQQLQL
VQAGKVGNVR LVDTAAVPEV AVRPKKVLVA LASLLLGLLA GCGTAIVRSM LFHGISDHNE
IERRLGLAVY ATVPISDHQR DLAEEAARKS GHRSILSIDF PNEPAVECLR SLRTALQFAM
LEAKNNVVLI AGPAPGVGKT FLSSNLAVVM ASAGKRVLLI DGDIRKGRLH DYLGFPRGRG
FTELIAGGAR VEDVIHREVV DGLDFISTGT MPKNPAELLL NRNLATLVGE LSSRYDIVVI
DSAPVLAVPD TGILGAVAGT ALLVTMAGKT KLGEIGESAK RFAQNGIRLN GVIFNGVNPR
LGQYGYGSKY GGYRYVAYEY GAQDA
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