| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5870 |
|---|
| Symbol | |
|---|
| ID | 6182769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 402994 |
|---|
| End bp | 403623 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641689002 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001815861 |
|---|
| Protein GI | 172065149 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATCG CCATAGAACC ATCAAGCGAA ACGTGCTATG TTCTCGGCAT GCCACGTAAG
ACTGACGCCC GCGCCCGCGC GATTGCCACG GCCCAACGAC TGTTTCGCAT CCAGGGCTAC
ACTGCGACGG GATTGACCCA GATCCTTGAA GAAAGCGGTG CGCCTAAAGG ATCGTTCTAC
TTCCACTTTC CGCGCGGCAA GGCACAACTC GCAGAAGAAG CAATCGATAG TTACATTGCG
GATCGAATCG CTGTATTACG AGACATCTCG GCGAGTACGA CGGGTGACGC CCTGAATTTT
GTTCATCAGA TTTTCAGGAC ATTCGCGGCT GAAATGGTCG CCTCTGATTT CCAGTATGGA
TGTCTGATGC AGAATCTGGC GAATGAGCTG CCCGCGCTCG ACGCCGAGCT CACCCAACGG
GTAGCGCGCG GATTTGCTGA GTCGACCGAA ATTATTGCGG AGCACTTTAG AGAGTGCGGT
TTCGCTCCCC CGCGCGCTTC CTCCACCGCC GCTGCATTGG TAGCCGCGCT CGAAGGCGCG
CGGACGATTG CCCGCCTGGA ACGCACGCCC GCTATATTCG AGGCGCTGGC GCTGGTGAGT
GTCCAAAGGT GCGCTGATCC CGAAAGGTAA
|
|---|
| Protein sequence | MPIAIEPSSE TCYVLGMPRK TDARARAIAT AQRLFRIQGY TATGLTQILE ESGAPKGSFY
FHFPRGKAQL AEEAIDSYIA DRIAVLRDIS ASTTGDALNF VHQIFRTFAA EMVASDFQYG
CLMQNLANEL PALDAELTQR VARGFAESTE IIAEHFRECG FAPPRASSTA AALVAALEGA
RTIARLERTP AIFEALALVS VQRCADPER
|
|---|
| |