Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5864 |
Symbol | ampC |
ID | 6182763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | + |
Start bp | 394683 |
End bp | 395852 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641688996 |
Product | beta-lactamase |
Protein accession | YP_001815855 |
Protein GI | 172065143 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGATTCA ACGCGATACG CATCGCCGCG ACCCTGTTCG TCGCCGCGTG CGCCGCCGTC ACGGCCGGCC GCGCGGCGGC CGCAACGCCC GACGAGATTC ACGACACCGT GACCCGCAAC GTCGCGCCGC TGATGAAGCA GTTCGCCATT CCCGGCATGG CGATCGGCAT CGTCGCCGAC GGCAAGCCCT ACGTGTTCGA CTACGGCGTG ATGTCGACGC AGACCGGCAA GCCGGTAACC GGCGACACGT TGTTCGAGAT CGGCTCCGTC AGCAAGACGC TGACCGGGAC GCTCGCGTCC GATGCGCAGG AGGGCGGCGA GCTGTCGCTG TCGGATCCTG TGGCCAAGTA CCTGCCCGCG CTGCAGGGCA AGCCGTTCGG CGGCGTGACG CTGCTCGAGC TCGGCACGTA CACGCCGGGC GGGATGCCGC TGCAGGTGCC CGACAGCATC CGCGACGACG CGGCCCTGAT GCGCTATCTC GATGCGTGGC GGCCCGCGTA CGTGCCGGGC ACGCGCCGCA CGTATTCGAA CGTCGCGCTC GGGATGCTCG GGCAACTCAC CGCGAAGGCG ATGAACGGCG ACTTCGCGGC ATTGATGGAA CAGCGGCTGT TCCCCGCGCT CGGGATGACG CATACCTATA TCAACGTGCC CGCCGCACGC CGGGGCGACT ATGCGCAGGG CTATACGCAG GACGGCAAGC CGATCCGGAT GACGGGCGGC ATGCTGTGGC AGCCGGCGTA CGGCGTGAAG ACGACGGCGA CCGACCTGTT GCGCTTCGTG CAGGCGAACA TGGGGCTGGT CGACACGGCG CCGCGTATGC AGCGCGCGCT CGAGCGCACG CACACTGGCT ATTTCCGTGC GGGGCCGTTC ACGCAGGACC TGATCTGGGA ACAGTATCCG TATCCGGTCG CGCTGCCGAC GCTGCTCGAA GGCAACGGGC CGGCGATGCT CCACGGCGCG ACGCCCGCGA CCGAACTCAA GCCGCCGCTC GCGCCGCGCC CGGACACGTG GATCAACAAG ACCGGCTCGA CCAACGGCTT CAGCACCTAT GTCGCGTTCG TCCCTGCGAA GCGGATGGCG ATCGTGATGC TCGCGAACCG CAGCTTCCCG ATCGAGAATC GCGTGAAAGC CGCGTACCGG ATCGTCGAGT CGCTGAACGG CAAGCCGTAA
|
Protein sequence | MRFNAIRIAA TLFVAACAAV TAGRAAAATP DEIHDTVTRN VAPLMKQFAI PGMAIGIVAD GKPYVFDYGV MSTQTGKPVT GDTLFEIGSV SKTLTGTLAS DAQEGGELSL SDPVAKYLPA LQGKPFGGVT LLELGTYTPG GMPLQVPDSI RDDAALMRYL DAWRPAYVPG TRRTYSNVAL GMLGQLTAKA MNGDFAALME QRLFPALGMT HTYINVPAAR RGDYAQGYTQ DGKPIRMTGG MLWQPAYGVK TTATDLLRFV QANMGLVDTA PRMQRALERT HTGYFRAGPF TQDLIWEQYP YPVALPTLLE GNGPAMLHGA TPATELKPPL APRPDTWINK TGSTNGFSTY VAFVPAKRMA IVMLANRSFP IENRVKAAYR IVESLNGKP
|
| |