Gene BamMC406_5760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5760 
Symbol 
ID6181877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand+ 
Start bp287751 
End bp288377 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content67% 
IMG OID641688896 
ProductTetR family transcriptional regulator 
Protein accessionYP_001815755 
Protein GI172065043 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.327742 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.559912 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACC GAAAGCGCGC GGCAATTCTC GCCGCGGCGA TCGAGGAATT TCGCGCGGCG 
GGCTACGACG CGACCAGCAT GGATCGCATC GCCGCGCGCG CGGACGTGTC GAAGCGCACC 
GTCTACAACC ACTTCCCCGG CAAGGAAGCA TTGTTCGCAG CGATCCTGCA CCAGCTGTGG 
GACGCGACGC TGACCGCCGG CGCGCCGGCC TATTGCGCCG ACGTGCCGCT GCGGGATCAG 
TTGCTCGCAC TGCTGGAGCG CAAATTGCGG TTATTGAACG ACGAAGCGTT TCTCGCGCTC 
GCTCGCGTCG CGATCGGCGC GGCCATCCAC TCGCCGGAAC GCGCGCGCGA CATGGTCGAA 
CGCATGGGCG AGCGCGAAGA GGACGTGACG GTATGGATTC GTGCGGCCGC GGCGGCCGGC 
CGGTTGGCGG CGACCGATCC CGTATTCGCC GCACATCAGC TGCACGGGCT CGTGAAAGCG 
TTCGCGTTCT GGCCGCAGGT GACGATGGGC CAGCCGCCGC TGGGCGCGCA GGAACAGCAG 
AAGGTCGCGG AAACGGCCGC CGACATGTTT CTTGCGTACT ACGCGTGTCC AGATCACGAT 
GGGGAGTGCG GTGCAGGGCA GGGCTGA
 
Protein sequence
MTDRKRAAIL AAAIEEFRAA GYDATSMDRI AARADVSKRT VYNHFPGKEA LFAAILHQLW 
DATLTAGAPA YCADVPLRDQ LLALLERKLR LLNDEAFLAL ARVAIGAAIH SPERARDMVE 
RMGEREEDVT VWIRAAAAAG RLAATDPVFA AHQLHGLVKA FAFWPQVTMG QPPLGAQEQQ 
KVAETAADMF LAYYACPDHD GECGAGQG