| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5720 |
|---|
| Symbol | |
|---|
| ID | 6181972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 230082 |
|---|
| End bp | 231590 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641688851 |
|---|
| Product | NCS1 nucleoside transporter |
|---|
| Protein accession | YP_001815715 |
|---|
| Protein GI | 172065003 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.244182 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.497544 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAG CAGCGATTCC CGCCGATGCC GACAGCGCCG CGGCGCCGGC CGGCAGCCTG
TACAACGACG ACCTCGCGCC GACGACGGCG GCGCAGCGCA CATGGCGGTG GTACCACTTC
GCGGCGCTGT GGGTCGGGAT GGTGATGAAC ATCGCGTCGT ACATGCTCGC GGCCGGGCTG
ATCCAGGAAG GCATGTCGCC GTGGCAGGCG GTGCTGACAG TGTTGCTCGG CAACCTGATC
GTGCTCGTGC CGATGCTGCT GGTCGGCCAT GCGGGCGCGA AGCACGGAAT TCCGTACGCG
GTGCTCGTGC GCGCGTCGTT CGGCACGCAG GGCGCGAAGT TGCCGGCATT GCTGCGCGCG
ATCGTCGCGT GCGGCTGGTA CGGCATCCAG ACCTGGCTCG GCGGCAGCGC GATCTACACG
CTGCTGAACA TCCTGACCGG CAACGCGCTG CACGGCGCGG CGCTGCCGGT GGTCGGCATC
TCGTTCGGGC AACTCGCGTG CTTCCTGGTG TTCTGGGCGC TGCAGCTGTA CTTCATCCTG
CACGGCACCG ATTCGATCCG CTGGCTCGAG AGCTGGTCGG CGCCGATCAA GGTCGTAATG
TGCGTCGCGC TCGTGTGGTG GGCGACGTCG CAGGCGGGCG GCTTCGGCTC GATGCTGTCG
GCGCCGTCGC AGTTCGTCGC GGGCGGCAAG AAGGCCGGAC TCTTCTGGGC GACGTTCTGG
CCGGGCCTGA CCGCGATGGT CGGCTTCTGG GCGACGCTCG CGCTGAACAT TCCCGACTTC
ACGCGCTTCG CGCATTCGCA GCGCGACCAG ATGATCGGTC AGTCGATCGG GCTGCCGCTG
CCGATGGCGC TGCTGTCGGT GGTGTCGGTC GTCGTGACGT CGGCGACCGT CGTGATCTAC
GGCAACGCGA TCTGGGATCC GATCGACCTG ACGAGCCGGA TGACCGGCGT CGGCGTCGGC
ATCGCGCTCG TGATCCTCAC GCTCGACACG ATGTGCTGCA ACCTCGCGGC GAACCTCGTC
GGCCCCGCTT ACGATTTCTC GAGCCTGTGG CCGAAGGCGA TCTCGTATCG CACCGGCGGA
ATGATCACCG CGACGATCGC GATCGTGATG ATGCCGTGGA AGATCCTCGC GACGACGGAC
GGCTACATCT TCACCTGGCT CGTCGGCTAT TCGGCGCTGC TGGGCCCGGT CGCGGGCATC
CTGATGGTCG ACTACTTCCT GATTCGCGGC ACGCGGCTCG ATACGCACGC GCTGTTCGAC
GAGCGCGGCG ACTTCAGCTA TGCGCGCGGC TGGAACCCGG CCGCGCTGGC CGCGCTCGCG
ATCGGCGTGC TGCCGAACCT GCCCGGCTTC CTGCACACCG CGTTCCCGGC GTCGTTCCCG
AACGTGCCGG CCTTCTTCAA CACGCTTTAC ACGTACGCGT GGTTCGTCGG CCTCGTGCTG
GCGTCCGGCG TGTACGGCAC CTGGATGAAG TGGCGCGCCG CCCAGCGCGC GCAGATCGCG
AGCGCGTGA
|
|---|
| Protein sequence | MKPAAIPADA DSAAAPAGSL YNDDLAPTTA AQRTWRWYHF AALWVGMVMN IASYMLAAGL
IQEGMSPWQA VLTVLLGNLI VLVPMLLVGH AGAKHGIPYA VLVRASFGTQ GAKLPALLRA
IVACGWYGIQ TWLGGSAIYT LLNILTGNAL HGAALPVVGI SFGQLACFLV FWALQLYFIL
HGTDSIRWLE SWSAPIKVVM CVALVWWATS QAGGFGSMLS APSQFVAGGK KAGLFWATFW
PGLTAMVGFW ATLALNIPDF TRFAHSQRDQ MIGQSIGLPL PMALLSVVSV VVTSATVVIY
GNAIWDPIDL TSRMTGVGVG IALVILTLDT MCCNLAANLV GPAYDFSSLW PKAISYRTGG
MITATIAIVM MPWKILATTD GYIFTWLVGY SALLGPVAGI LMVDYFLIRG TRLDTHALFD
ERGDFSYARG WNPAALAALA IGVLPNLPGF LHTAFPASFP NVPAFFNTLY TYAWFVGLVL
ASGVYGTWMK WRAAQRAQIA SA
|
|---|
| |