| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5699 |
|---|
| Symbol | |
|---|
| ID | 6181952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 211136 |
|---|
| End bp | 211855 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641688831 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001815695 |
|---|
| Protein GI | 172064983 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0607724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT GGCGAGAGTC GTTGCTGGCA AGCCTGGAGC AGGTGAAAAC AGCTTCCGAG
GCATTCGATA ATCTTGCTCC GGCAGTCCGC GCACTGGGTT TTGAATATTA CGCATATGTG
CTGAGGATCA CGATTCCGAT TACGAGGCCG GCCATCATGG GATGGAGCAA TTATCCGGAG
GCCTGGCGCA CGCATTACAC GCAGCGGGAT TATCAGCACG CCGATCCGGT TCTTCATTAC
GGACAGGCGT GTACGAGACC GATGCCCTGG CCGGGGCCGC TTCCCGGCTA CGACGCATTC
TGGCGCGACG CCGCGGCTTT CGGCCTGTGC TACGGCTGGT CGCAGACCAC GCGCGATCAC
CGCGGCGCGA TGGGCACCGT CAGTCTCGTG CGCGGCGGAC CGCCGATTGC GCCGGACGAG
CTGCGGCGCA CCGAACCCGA GATGATCTGG TTTTGCCAGT TCGTTCACGC GACGATGAGC
AATCTGATCG TGTCCGACGT GATGCCGAGC GGCGCCATGC GGCTGTCGCT GCGCGAAAAG
CAGGTGCTGC ACTGGACCGC CGAGGGCAAG ACGGCGGCCG AAGTCGCCGT GATTCTTCAA
TTGTCCGAGC GTAACGTCGG CTTCCACATC CAGAACGCGA TCGACAAGCT CGACGCGGCC
AACAAGACGC ACGCGACGGT CAAGGCTGCG ATGCTCGGAC TGATTCCAGT CCGCTGCTAG
|
|---|
| Protein sequence | MNQWRESLLA SLEQVKTASE AFDNLAPAVR ALGFEYYAYV LRITIPITRP AIMGWSNYPE
AWRTHYTQRD YQHADPVLHY GQACTRPMPW PGPLPGYDAF WRDAAAFGLC YGWSQTTRDH
RGAMGTVSLV RGGPPIAPDE LRRTEPEMIW FCQFVHATMS NLIVSDVMPS GAMRLSLREK
QVLHWTAEGK TAAEVAVILQ LSERNVGFHI QNAIDKLDAA NKTHATVKAA MLGLIPVRC
|
|---|
| |