| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5656 |
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| Symbol | |
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| ID | 6182111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 160841 |
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| End bp | 162538 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641688788 |
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| Product | type IV prepilin |
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| Protein accession | YP_001815652 |
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| Protein GI | 172064940 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0112418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAGC GCACCCGTAC CCTTGCCCGC AACGGCATGC GGCGCCCCGG CCCCCGCGTG
CGGCCGGCCC GCCGCATGTC CGGCTTCACA ATGGTGGAGA TGCTGGCCGT GCTTGCGCTC
GCCGCCTTGA TGATGGCGGG CGTCGTCACG CTCACGAACT CGTCGCTCGA CGATACGCGC
GCGCAGCAGG CCGCGCTTTA TCAGTCGCAG CTGACGGCGG CTGCCACGCG GCTCATTCAA
CAGAACTACA CGGCGCTCGC GGCCCAGGCC ACGACCACCT CGCCGGTGAT CGCGAAAATG
ACCGGCTCGA CGTATCAGCT GTCGACCTAC CTGTCGAATG CGTTGAGCGG CACGAACCCG
TATGGTCAGG TGCCGTGCCT GCTCGTCTAC GCGGCTCCGG GCGGCGCCAA CCCGGCGGCG
TTGCAGGCGC TGCTCGTCAC GGAGGGCGGC CGGACCATTG CCGATCCCGA ACTCGGCTAC
ATCGCGGCGA ACGCCGGCCC GGGCGGCGGT TCGATCCAGG CGGCGAACAA TGCGATCGGC
GCGGCCATCG GCGCCTTCGG CACCTGGAAG ATCGATGCGC CCAACCCGGC GAATACCTCC
TGCACGGGCA CGAAAACGGG CACGGGACAT CTGGCGAGCC TGATTTTCTA CGACGGCACG
CAGGCGCAGA ACGTCGACTA TCTGTACCGC GTGGCCGTGC CGGGCAATCC GCAGGCGAAC
ACGATGCAAG TGCCGATCGT GCTCGCGCGG CAGATCGACT ATGCCGCCTG CACGCAGCCC
GGCGCCATCG CGGCCGACGC TTCGGGCAAC GTCCTGAATT GCGATGGAAC GCAGAATCTC
TGGGTGCCGC AGGCGGCCTA TCACTGGCGC GAACCGGTGG CCGACGAAGC GGCGCTCGGG
GGCGTTGCCG CGCATCAGGG CGACGTGCGG CTCACCACCG CGACGAATCG GGCCTATGCG
TACAACGGCG CCACATGGGA GGCGCTGGCG GTGGACGAAG CGGGCAATCT CGCGCTCGGC
AACGCGCACA ACGTCGGCGA CCCATGCCCG CCCGCGCCGC AGAATCCGGC CATCGCCCCC
GCGTCGGCGA GCACGACGCT CGTCTCCACC GATGCGAACG GGCGCGTGCT GTCGTGCCGC
GGCGGCAAGT GGCAAACGCA AAGCGAAATC GAGCCGGCGT CATCGCTCAC GGGCTGTCAG
CTCGTGATGG CCAACCCGAA CGGCGCGGGC GATTACTCGG CCTGCACGGG CCAGCCGGCG
ACGAACTTCC AATCGGGCGC CTATTCGTAC AACGGCAGCA ACGGTACGTA CTCGTATACG
TTCAGGACGA CCGTCAACCT CACCAAGCCG GGGATCATCG TCGCGTCCAC CTGGGCGCAC
TTGAACGACG GCATGTGCAA CGGCCCCTCC GGCAACCGGG CGCAGCTCTC GCAGAGCATC
GACATCACCG ACAGCGGCAA CCACAACCTC GGGCATACGG AGAGCCAGAC GCCGACGCTT
CAGGACGATT CGGGCGGGAT CAACAACGCG CTGTCCCAGG CGGGCACGCC TGGCGCCTAT
ACGATCGTCG TGACGACGAA CTGGGCGACG TACGCCGGTA TCACGACGCC GTGGGTCAGC
AGCTTTTGCG GGGAGTCCGG CCAGACGGTC TGGAACACGC CCGTCGCGGC GGGCTGGACG
ATCAACTCCT ACTACTGA
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| Protein sequence | MTERTRTLAR NGMRRPGPRV RPARRMSGFT MVEMLAVLAL AALMMAGVVT LTNSSLDDTR
AQQAALYQSQ LTAAATRLIQ QNYTALAAQA TTTSPVIAKM TGSTYQLSTY LSNALSGTNP
YGQVPCLLVY AAPGGANPAA LQALLVTEGG RTIADPELGY IAANAGPGGG SIQAANNAIG
AAIGAFGTWK IDAPNPANTS CTGTKTGTGH LASLIFYDGT QAQNVDYLYR VAVPGNPQAN
TMQVPIVLAR QIDYAACTQP GAIAADASGN VLNCDGTQNL WVPQAAYHWR EPVADEAALG
GVAAHQGDVR LTTATNRAYA YNGATWEALA VDEAGNLALG NAHNVGDPCP PAPQNPAIAP
ASASTTLVST DANGRVLSCR GGKWQTQSEI EPASSLTGCQ LVMANPNGAG DYSACTGQPA
TNFQSGAYSY NGSNGTYSYT FRTTVNLTKP GIIVASTWAH LNDGMCNGPS GNRAQLSQSI
DITDSGNHNL GHTESQTPTL QDDSGGINNA LSQAGTPGAY TIVVTTNWAT YAGITTPWVS
SFCGESGQTV WNTPVAAGWT INSYY
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