| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5556 |
|---|
| Symbol | |
|---|
| ID | 6182355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 52243 |
|---|
| End bp | 54525 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641688688 |
|---|
| Product | putative sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001815552 |
|---|
| Protein GI | 172064840 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGGA TCCAGAACAG GGCCGCTTGC GTCCCGGACG GGCGCGCGCA CGGCCACGGC
ATGCTTGATG CACAGATGCT GATCGGCGTG TCGGCAGCAT TTCGCCAACT GGTCCGGATG
ATCGATCGGG TGGCGCCGAC CGAACATACG CTACTGATTG TCGGACCCAC CGGCTCCGGA
AAGGAATTGG TGGCGCGGCG CCTTCACGCA AACGGCCCGC GGTGCGACAA GCCGTTTATC
GACGTGAATT GCGGCGCCAT TCCACACGAT CTGATCGAAG CGGAATTCTT CGGGCATGTC
CGCGGCGCCT TTACGGGCGC TGTCGAAGAC CACCGCGGCC TGTTCGACCA GGTCGGGGCC
GGCACGCTCT TTCTCGACGA GATCGGCGAG CTGCCGCTTG CGCTACAGCC CAAGCTGCTG
CGCGTGCTCG AAACGCGCAC GTTCCGTCCG ATCGGCGCAT CGGCAAGCCA GCGTTTTGCC
GGACGCATCG TTGCGGCCAC CCATCGAAAC CTGCTGGAAG AAGCGCGCGT TGGCCGGTTC
AGGGAAGACT TGTTCTACCG GCTTGCGGTG TTCATCCTCA ATGTGCCGGG ACTCGCGCAA
CGGAGCGAAG ACATCCCGCT GCTGGCCGTG CATTTTGCAG CCCAGCAAAC GCGCGCGATC
GCGTTCACGC CGGCGGCAAT CAAGCGCATG TGCGAGCATC CGTGGCCCGG CAACGTTCGC
CAGTTGCGCA ATCTCGTCAG CCAGCTCAGC GTGTTCGCGG AGCATGCGCG GATCGACGCC
GAAACGCTCG CGCCGTTTTT GGCCACGGAC ACGCCCGACG CGACGGCATG TGCGCTTCTG
GCGGACCGCT TGCTCGAGTT CGGTGGCAGC GACAAGCTGG CCGCGGCCGA ACGCCTGCTC
ATCGACCGCG CGCTGGAGCG GACTTCGTAT AACAAGAGCG CCGCGGCCGC GTTGCTCGGT
GTCGGCCGGA AGGTCGTCGA GCGCCGGCTC AAGGCGCGCG AAGCGCAATA CGGGGAGGCT
CGACAGTGCC TGGAGCGTGC GGAAGCGCTG GCCGGCGCCA TCCAGTATCG CGAATCCGTC
GCGCTGCTGC ACCGCTGCCT CGATCTCCTG CAAAAGGCCA GTCCGACCGA GGAGAGCCGC
CGATTGCAGT TTGGTGCCTA TCGCCTGCTC GCCATTGTGC TGCAAGGCGT TCATGGCTGG
CAGTTTCCCG AAGCGACCGC TTGTTACGAG GCTGCATTGT CGATCGGCGA TGGCGTCTGC
GACGCGCGCG AACTCGCCAC GGCGCGGTTC GGCATCTGGA TGACGCAACT GGTGACGCTG
CAACTCACGC GGGCGCGTGC CACTGCGCAG GAGCTGCTTC ACCGCGCGCA CGCGATGGAC
GATCGGGCGA TGCTCGACGA CGCGCACGTG GCGCTGGCCA ACACACTGTT CTGGCTCGGC
GACAGTGAGG AAGCGCTGGC GCTGCTTTCC CGTGGCGGGC TGACCGGCAT CGGCCGCGCC
GGTCGGCGGC CTGGCGTCTC AGGTGCCGAT GTCGCGGGAC TCGCATTGAC GTTCGAAGGT
CTCGCCGCTT ACCAGACTGG CGCACTCGAC GACGCACGCG ATGCCATGGG CCGTTTGACC
GAGCGGGCGG AACTCGATCC GCCGGATTTG CCCGGTCGAG CGCTCGACCT GCAAGGTGCC
GCGTGGCTTG CGATGCTCTT CAACGACGTC GAGCGGCTCG GGAGCCTGAC CCGTGGGTTC
GACGCAATAC CGGCCGGCGC ACCGGCCTGT TCGCGCGGTG CGGTCCGGAT TTTCCGGGCG
TGCTATCTGA GCGCGATCGG CGAGTTCGGC GATGCCGAGG CGATGCTGCT GGACGGCTAT
GAAAACGAGA TCGAAAAGCA GGGCGGTGCG CTGTTCCATT CGATCAAGGC CTGGAAGCAT
GGCGAGATAC TGTTGAGCAC GGGCCGCGCG CGGCAATGCG AAGTGCTCGT TTCCGACGCG
CTCGACAAGG CGATCCGCAG ACAGGAGCGT GCGTATCTCG GTGAGTTGTT GATCCTCAAG
GCGCGTGCGC AATCGATGCT GGGTGATATG GCCGGTGCCG AGCAAGGGTT GCGCATTGCG
ATCTCGACGG CGTTGGCGCT GGGCTCGGTA CCCGCTCGTC TTGCCGCGAT GGGACATCTC
GCGGATTTGT CGCGGCACGC CGCTTGCCAG ACGTCGATCA TCGAAGCGAT CGACCGACCA
TTGCACATGC CGGTCGCGGC CCGCCCTCCG TCCACTCCGC TCCAGGAGCC GGGCCTGCTG
TAG
|
|---|
| Protein sequence | MKGIQNRAAC VPDGRAHGHG MLDAQMLIGV SAAFRQLVRM IDRVAPTEHT LLIVGPTGSG
KELVARRLHA NGPRCDKPFI DVNCGAIPHD LIEAEFFGHV RGAFTGAVED HRGLFDQVGA
GTLFLDEIGE LPLALQPKLL RVLETRTFRP IGASASQRFA GRIVAATHRN LLEEARVGRF
REDLFYRLAV FILNVPGLAQ RSEDIPLLAV HFAAQQTRAI AFTPAAIKRM CEHPWPGNVR
QLRNLVSQLS VFAEHARIDA ETLAPFLATD TPDATACALL ADRLLEFGGS DKLAAAERLL
IDRALERTSY NKSAAAALLG VGRKVVERRL KAREAQYGEA RQCLERAEAL AGAIQYRESV
ALLHRCLDLL QKASPTEESR RLQFGAYRLL AIVLQGVHGW QFPEATACYE AALSIGDGVC
DARELATARF GIWMTQLVTL QLTRARATAQ ELLHRAHAMD DRAMLDDAHV ALANTLFWLG
DSEEALALLS RGGLTGIGRA GRRPGVSGAD VAGLALTFEG LAAYQTGALD DARDAMGRLT
ERAELDPPDL PGRALDLQGA AWLAMLFNDV ERLGSLTRGF DAIPAGAPAC SRGAVRIFRA
CYLSAIGEFG DAEAMLLDGY ENEIEKQGGA LFHSIKAWKH GEILLSTGRA RQCEVLVSDA
LDKAIRRQER AYLGELLILK ARAQSMLGDM AGAEQGLRIA ISTALALGSV PARLAAMGHL
ADLSRHAACQ TSIIEAIDRP LHMPVAARPP STPLQEPGLL
|
|---|
| |