| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5544 |
|---|
| Symbol | |
|---|
| ID | 6182343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 40125 |
|---|
| End bp | 41198 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641688676 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001815540 |
|---|
| Protein GI | 172064828 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.849034 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATA TCGATACCGA CCTGCCGGTG ATGGTGACCG GCGCAACCGG CTACGTCGCG
GGCTGGCTCG TGCAACGGTT GCTCGAAGCC GGCGTGACGG TGCATGCGGC CGTTCGTCAT
CCCGACGATC CCGACAAGCT CAAGTATCTG CAGCGCATCG CGGCCGGCCA GCCCGGCACG
ATCCGCTATT TCCGCGCGGA CCTGCTCGAA CCGGGATCGT ATGCGGACGC GATGGCCGGT
TGCGGCACCG TGTTCCATAC CGCATCGCCG TTCACCGTCT CCGTTCGTGA TCCTCAGAAA
GAACTGGTCG ACCCGGCGCT GCTCGGCACG CGCAACGTGC TCGACACCGT GAACCGCACG
CCGTCGGTCC GGCGCGTCGT GCTGACCAGC AGCTGCGCCG CGATCTACGG CGACAACGCC
GATCTCGACG CGGTGCCGAG CGGCGTGTTC ACCGAGGCGA ACTGGAATAC CAGTTCATCG
CTGACGCACC AGCCGTATTC GTATTCGAAG ACGGTGGCCG AGCGCGAAGC GTGGCAGATC
GCCGGCGCGC AGCAACGCTG GCGTCTGGTG ACCATCAATC CGTCGCTCGT CATCGGGCCC
GGCATCAATC CGTACGCGAC GTCGGAGAGC TTCGAGATCG TCCGGCAGAT GGGCGACGGC
ACGATGAAAA TGGGCGTGCC GGATCTCGGC ATGGGCGCGG TCGACGTCCG CGATGTCGCC
GACGCGCACC TGCGGGCCGC GTTCCTGCCG GACGCGAACG GCCGCTACAT CGTATCCGGT
CACAACACGA GCCTGCCGGC GATGGCGGCG ACGCTGCTCG AACGGTATGG CGCCGACTAT
CCGATCCCCC GGCGCATCCT GCCCAAATGG CTCGTGTGGT CGATCGGCCC GCTGGTGAAC
AAGGGCGTGA CGCGCCGCGT CGTCGCCCGC AACGTCGGAC TGCCTTGGCG CGCCGACAAT
AGCCGCAGCC GCAACGAACT CGGGATCCAC TACCGCCCGC TCGCCGAGTC GATGAACGAC
TTCTTTCAGC AGCTGATCGA AACCGGGCAA TTGCGGCGAG GAGCCGCTTC GTGA
|
|---|
| Protein sequence | MMNIDTDLPV MVTGATGYVA GWLVQRLLEA GVTVHAAVRH PDDPDKLKYL QRIAAGQPGT
IRYFRADLLE PGSYADAMAG CGTVFHTASP FTVSVRDPQK ELVDPALLGT RNVLDTVNRT
PSVRRVVLTS SCAAIYGDNA DLDAVPSGVF TEANWNTSSS LTHQPYSYSK TVAEREAWQI
AGAQQRWRLV TINPSLVIGP GINPYATSES FEIVRQMGDG TMKMGVPDLG MGAVDVRDVA
DAHLRAAFLP DANGRYIVSG HNTSLPAMAA TLLERYGADY PIPRRILPKW LVWSIGPLVN
KGVTRRVVAR NVGLPWRADN SRSRNELGIH YRPLAESMND FFQQLIETGQ LRRGAAS
|
|---|
| |