| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5445 |
|---|
| Symbol | |
|---|
| ID | 6180863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2684052 |
|---|
| End bp | 2684789 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641685200 |
|---|
| Product | histidine utilization repressor |
|---|
| Protein accession | YP_001812105 |
|---|
| Protein GI | 172064454 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0118538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCACAA AGGCCACCGC ACCGTTCCAG CAGATCAAGA CGCTCGTTCG CCAAAAGGTC
GACGCGAGCG AGTGGCGCCC GGGCGACCGC ATTCCGTCCG AACTCGATCT CGCCGCGCAA
TTCAGCGTCG CGCGCATGAC GGTCAACCGC GCGCTGCGCG AGCTGACCGA GGAAGGTGTG
CTCAAGCGCA TCGCGGGCGT CGGCACCTTC GTCGCCGAAG TGAAGCCGCA GTCGAACCTG
CTGATGATCG CGCACATCCG CGACGAGATC CGCGCGCGCG GACACGAATA TCGCTGCCGC
GTGCTCAGCC AGTCGCGCGA ACCCGCGTCG TTCGACGTCG CGGCCGCGTT CGGGCTGGCG
GTCAACACGC CGGTCTTTCA CGTGGTGTGC GTGCACGAGG AAAACGGCCG CCCGATCCAG
CTCGAGGATC GCTACGTGAA TCCGGCCGCC GCGCCCGAAT TCATCGATCA GGACTTCCAG
GCCGAGCCGC CGTCCGAATA CCTGTTCAAC AACGTGTCGC ACTACGAACT GGAGATCGAG
CACGTCGTCG ACGCGTCGCT GCCGACGAGC GAACAGGCGC GGCTGCTCGA CATGCGCGCC
GACGAGCCGT GTCTCACCCT CACGCGCCGC ACCTGGACGA ACGGGCTGCC CGTCACGTTC
GTGCACTTCC TGCATCCGGG CAACCGCTAC CGGCTCGGCT CGCGCTTCAA GCCGGGCGCC
GGACGGCACC AGACCTGA
|
|---|
| Protein sequence | MVTKATAPFQ QIKTLVRQKV DASEWRPGDR IPSELDLAAQ FSVARMTVNR ALRELTEEGV
LKRIAGVGTF VAEVKPQSNL LMIAHIRDEI RARGHEYRCR VLSQSREPAS FDVAAAFGLA
VNTPVFHVVC VHEENGRPIQ LEDRYVNPAA APEFIDQDFQ AEPPSEYLFN NVSHYELEIE
HVVDASLPTS EQARLLDMRA DEPCLTLTRR TWTNGLPVTF VHFLHPGNRY RLGSRFKPGA
GRHQT
|
|---|
| |