| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5182 |
|---|
| Symbol | |
|---|
| ID | 6180304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2372006 |
|---|
| End bp | 2373430 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641684933 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001811843 |
|---|
| Protein GI | 172064192 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.939705 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCA GCTCTGCTCA GGGTGGTCGG ACGACCGACT TCTTGCCGTA TCTCGTCGCC
GCGACCTTCT TCATGGAGTA TCTCGACACG ACCGTGATCG CGACCGCGCT GCCGCAGATG
GCGCATTCCT TCGGCGTCGG GCCGAATGCG CTGAGTCTCG GGATGACGGC CTACATGCTC
GCGCTCGCGG TGTTCATCCC GATCAGCGGC TGGATCGCGG ACCGATACGG TTCCCGCACG
GTGTTCGGCA GCGCGATCGT GATTTTTACC GGGGCATCGA TTCTGTGCGG GCTGTCCAAC
GGCGCTGTGA CGTTTACGGC CGCACGGGTG CTGCAGGGCG TCGGCGGGGC GATGATGGTG
CCGGTCGGGC GGATGATCGT CGTGCGCAGC ACCGAGAAAG CACGGCTGAT GCGCGCGATC
GCGACGATCA CGTGGCCGGG TATCGTTGCG CCGGTCGTGG GGCCGCCGAT CGGCGGCTTC
ATCACGACCT ATGCGTCATG GCGATGGATC TTCCTGTTGA ACGTGCCGCT TGGCCTCGCC
GCGCTGGTCT GTACGTGCTT GATCGTGCGG AATACGCGTG CGGACGAACA GCGGCCGCTC
GATTGGGTCG GCTTCGTGCT GGCGGGCGGG GCGCTGACCT GTCTGCTGCT CGGTACCGAA
ACGGCCGGTC AGCAGGATGC GCCCTTCACG CGCGCGGCCG TGCTGGTCGG GGCCAGCGTA
TTGTTCGGCA TCGCCGCGTG GCTGCACGCG CGGCGTTGCG CGCACCCGCT GCTCGATTTC
ACGACGCTGA AGGTGCCGAC CTTCTCGGTC ACGGTGCTCA CCGGATCGGT CACGCGGATT
GCGGTCAATG CGGTGCCCTA TCTGCTGCCA TTGATGTTTC AGATCGGTTT CGGGCTGTCG
CCGTTCCAGT CCGGTTTGCT GTTGCTCGCG AGCGCGCTCG GCAATCTGGG CATGAAGGCG
GGCACGTCGT GGATCCTCGA TCGTTTCGGG TTTCGCCGCG TCGCGCTCGT CGACGTGACG
ATCGTCGGCT TCTTCACGAT CGCATGCGGC TGGCTGACCG CGTCGACGCC GCTCGCGATC
ACGCTGCTGG TCGTATTCGT CTACGGGCTG ACGCGCTCGA TGCAGTTCAC GACGCTGGCG
ACCCTCGCCT ATGCCGATGT TCCGTCGCAC CAGACGAGCG CCGCGAGCAC GCTGTGGAGC
GCCGCGCAGC AGATGACGAT CGGGATGGGG ATCGCATTCG GCGCGCTGGC ATTGCGGCTC
GCCGCGCTGA TGCGCGGCGA TGCGGCCGGG ATTCACTACG TGCTCGACGA TTTTCGCTGG
GCGTTCGTTG CCGCGGGCGT ACTCGCGCTG CTGACGTTGC CGGGCTATGC GCGGCTCGCC
TCCGACGCGG GCGATCGACT TCGGGCGAGT GCCGCGCGAG GATAG
|
|---|
| Protein sequence | MTSSSAQGGR TTDFLPYLVA ATFFMEYLDT TVIATALPQM AHSFGVGPNA LSLGMTAYML
ALAVFIPISG WIADRYGSRT VFGSAIVIFT GASILCGLSN GAVTFTAARV LQGVGGAMMV
PVGRMIVVRS TEKARLMRAI ATITWPGIVA PVVGPPIGGF ITTYASWRWI FLLNVPLGLA
ALVCTCLIVR NTRADEQRPL DWVGFVLAGG ALTCLLLGTE TAGQQDAPFT RAAVLVGASV
LFGIAAWLHA RRCAHPLLDF TTLKVPTFSV TVLTGSVTRI AVNAVPYLLP LMFQIGFGLS
PFQSGLLLLA SALGNLGMKA GTSWILDRFG FRRVALVDVT IVGFFTIACG WLTASTPLAI
TLLVVFVYGL TRSMQFTTLA TLAYADVPSH QTSAASTLWS AAQQMTIGMG IAFGALALRL
AALMRGDAAG IHYVLDDFRW AFVAAGVLAL LTLPGYARLA SDAGDRLRAS AARG
|
|---|
| |