Gene BamMC406_5162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5162 
Symbol 
ID6180122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand+ 
Start bp2348997 
End bp2349671 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content65% 
IMG OID641684913 
ProductTetR family transcriptional regulator 
Protein accessionYP_001811823 
Protein GI172064172 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.122941 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCTG CAAGCAAGGC CGCCACGTCC GAAAGCCGCG CGCTTGCGAC CGATGCGCGG 
CGCAAATACG ATCCCGAGCA AACCAAGCGC AATATCCTCG ACGTCGCCAC GCAGGAGTTC 
TCCGCGATGG GCCTCGCCGG TGCGCGCGTC GACGCGATCG CCGAGCGTAC GAACACGACG 
AAGCGCATGC TCTACTACTA CTTCGAAAGC AAGGAAGGCC TGTACGAGGC CGTGCTGGAG 
AAGGTGTACG GCGACATCCG CGCGCTCGAG CAGGAACTGC ACGTCGGCGA CATGGAGCCG 
CGCGAAGGCA TGCGCCGGCT CGTCGAATTC ACGTTCGACT ATCACGACAA GCATCGCGAC 
TTCGTCCGCC TCGTGTCGAT CGAGAACATC CACGGCGCGA AGTATCTCGA ACAGCTGAAG 
TCGTTCAAGA ACCGCAACGT CAGCATCATC AAGACGCTCG AGGAACTGCT CGAGCGCGGC 
GCGGCGAGCG GCGCGTTCCG CAAGGACATC GACGCGTTCG ACCTGCACCT GCTGATCAGC 
TCGTTCTGCT TCCACCGCGT GTCGAACCGC TACACGTTCG GCGCCGCGTT CGGCCGCGAC 
CCGTCGGCGC CGCGGCTGCG CGCGCGGCAT CGCGAGACGA TCGCCGACTC GGTGCTGCGC 
TACGTCGCCG CGTAG
 
Protein sequence
MKAASKAATS ESRALATDAR RKYDPEQTKR NILDVATQEF SAMGLAGARV DAIAERTNTT 
KRMLYYYFES KEGLYEAVLE KVYGDIRALE QELHVGDMEP REGMRRLVEF TFDYHDKHRD 
FVRLVSIENI HGAKYLEQLK SFKNRNVSII KTLEELLERG AASGAFRKDI DAFDLHLLIS 
SFCFHRVSNR YTFGAAFGRD PSAPRLRARH RETIADSVLR YVAA