Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4347 |
Symbol | |
ID | 6179613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 1428098 |
End bp | 1430026 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641684113 |
Product | TonB-dependent receptor |
Protein accession | YP_001811024 |
Protein GI | 172063373 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCTTC GCCACCTTCT CGCCACGTCC GCCGCCACCG CGCTCCTCTC CCCGATCGCC CATGCTGCCG GCGACACGGC GCCCGCGCAG CCGCCCCAGC CCGCCGATGG CATCGACCTG CCGGCGATCA CCGTGACCGA CACGCGGCAT CTGCCCGAAT CGTTCGACCA GCGCTATGCG ACGACGCAGG TGCTCACGCG CGCCGATCTC GACCGCCTGT CGCCGAGCGA GCCGAGCATC ACGCAGGCGC TCGCGATGCT GCCGGGCGTG ACCGTCTCGC AGACCGGCGG CCCCGGCTCG TCCGCGTCGG TCAGCATCCG CGGCTCGTCG GCCAGCCAGG TCGCGGTATT CATCGACGGG ATCCGGATCG GGTCGCCGAC CACCGGCATC GCGCCGTGGG CCGACCTGCC GACCGAAGCG TTCGAGCGCG TCGAAGTGAT TTCGGGGCCG GCCGCCGCAT CGTTCGGCGC GAACGCGATG GGCGGCGTCG TGCAGCTGTT CACGCGCCGC GCCGCCGGCC AGCCCAACCA GACGAGCGTG TCGTTCGGCG GCGGCTCGAA CAAGACCTTC GACACGCAGC TGCGCACGTC GGGCACCGTG CCGTCGACCG GGCCGCTGGC CGCGCTCGGC GGACTCACTT ACTCGCTCGG CCTGCACTCG TACAACACCG CCGGCATCGA CGCGACGCGG CCCGTGTTGC CATACCACGA GGACGGCCGC AATCCGTATC ACGCGCAGGA TCTCGATGCG CGCCTCGGCT ACGCACGCGA TAACTGGTCG ATCTCGACGT TCGCGCTGTA TCACCGCTCC GACCTGTCCT ATGACAACGC CGGCTTTGCG AACCGCGAGC TCGATCATCA GCTGACGACC GGCATCGCGT TCCATCTCGA CATCACGCCC GACACGCAGT TCGACCAGTC GTTTGGTTAT GCGAACGACC GCCAGTTCCT GTATGCGAGC GACCCGTCCA TCCGGACCGA CCGGATCGAC TCGCAGCGCA TCAGTTCGTC GACGTCGCTG ACCCATCAGG CGCACGGCTT CCACCTGTTC GGCCTGCCGC TGTCGGGCGA GACGAAGGTC GCGTACGACT TCACGCGCGA GCAGGCGTTC CTGCCGATCG ACGTGCCGGA CGGCGTGCCC ACGCGCAACG ATTCCGCGTT CTCGCTGCAT CAGTCGGCGA CGCTCGGCAG CGTGACGATG TTCGTCGCGG GCCGTCACGA GATCATCGCG GGGAAAACCG TGAACACCGG CAACGCCGCG TTGTCGTGGG CGATCACGCC GGTCTATACG GCGCGCGTGT CGTACGGCAA TGCATTCCGC CTGCCGTCGT TCAACGACCT GTACTACCCC GGTTACGGCA ATCCGAACCT GAATCCGGAG CGCAGCGATT CGGTCGAAGC CGCGCTCGAA GCGAACACCG CGTACGGCAC GTTCAGCGCC GCGATCTACG ATACGCGCGT CAACAACCTG ATCGCGTACA ACCCGGCGAC GTTCTCGCCG ATGAACATCG GCCGCGCGCA TATCCGCGGC ATCGACCTGT CGTACAAGGG CACGATCGGT CGCACGACGC CGGTGAGCAT CGCGGTGGGG ATTCTCAATC CGCAGGACGA AACCAACGGC AGCTGGCTCA ACCGCCGGCC GCGCCAGACG GTCAGCGTGA ACATCGACCA CACGTGGGAC GAACTGCACC TGCATGCACT GAGCACCGGC GCATCGCTGA ACTACGGCGG CACGACGTTC GACGACCCGG CCAACGCCAC GTATCTGCCG TCGTATCTGA CCGTGAACCT GCGCGCGTCG TACAAGATCA ATGCGCACCT GACGGTGTCG GCGACGCTGT CGAACCTGTT CGACCGTCAG TACGTGACTG CGTACGGCTA CAACACGCTC GGGCGCACCG CGTTCGGTAA GGTCAGCTAT ACGTTCTGA
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Protein sequence | MNLRHLLATS AATALLSPIA HAAGDTAPAQ PPQPADGIDL PAITVTDTRH LPESFDQRYA TTQVLTRADL DRLSPSEPSI TQALAMLPGV TVSQTGGPGS SASVSIRGSS ASQVAVFIDG IRIGSPTTGI APWADLPTEA FERVEVISGP AAASFGANAM GGVVQLFTRR AAGQPNQTSV SFGGGSNKTF DTQLRTSGTV PSTGPLAALG GLTYSLGLHS YNTAGIDATR PVLPYHEDGR NPYHAQDLDA RLGYARDNWS ISTFALYHRS DLSYDNAGFA NRELDHQLTT GIAFHLDITP DTQFDQSFGY ANDRQFLYAS DPSIRTDRID SQRISSSTSL THQAHGFHLF GLPLSGETKV AYDFTREQAF LPIDVPDGVP TRNDSAFSLH QSATLGSVTM FVAGRHEIIA GKTVNTGNAA LSWAITPVYT ARVSYGNAFR LPSFNDLYYP GYGNPNLNPE RSDSVEAALE ANTAYGTFSA AIYDTRVNNL IAYNPATFSP MNIGRAHIRG IDLSYKGTIG RTTPVSIAVG ILNPQDETNG SWLNRRPRQT VSVNIDHTWD ELHLHALSTG ASLNYGGTTF DDPANATYLP SYLTVNLRAS YKINAHLTVS ATLSNLFDRQ YVTAYGYNTL GRTAFGKVSY TF
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