| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4315 |
|---|
| Symbol | |
|---|
| ID | 6179270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1389174 |
|---|
| End bp | 1390724 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641684082 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001810993 |
|---|
| Protein GI | 172063342 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.44489 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTCA AGGCGCGCCT CCTGAACGCC GTTCTCGCCA CTCCCCCCAG CGGCAATCAC
CGCGTGACGG CCGCACTGCG TCCGTCGATG CTCGGCACGC TGTTCGAGGA CGTGCGCCCG
ATGGCGCTGT CCGGCGTCGC CAGCGCGTTC GTCGCGGCGA TCGCGCTGAT CCGTCTGCAG
CAACTCTGGT GTTTCGTGTG GCTCGTCGTC GACGTCGGCC TGCTTGTCGC GCGGCTCGCG
ATCGCGCGCG CGTATGCGGT ACGCCGTGCC GCCGGCGACG ATCGCGCCGA ATACTTCGCG
CGGCACTATG CGCCCGTGTC GCTCGCCGCG TGCTTGTTGC TCGGTCTCGG CGTGATGGGC
TGCGTGGATG CGTCCGATGC CGAGCTCGGC ACGCTGTCGG TGATGGTCGC GGGCGGCGTG
TTCGGCGGGA TCGCGTCGCG CAATTCGGCG CTGCCGCGGC TCGCGATGAC GCAGGTCACG
CTCGGCGTGC TGCCGATCGG CGTCGGCGCG CTGCTGGCCC GGCGGCCCGA TGCGTGGCTG
CTGCTGCCGC CGCTCGTGAT CTATCTCGCG GCGATGCGCA CGGTCGTCCA GCGCCATTAC
CGCGTGCTGG TCGCGCTGAT CGCCGCGCGC CAGCGCAACG CCGAGCTCGT CGCGCGCTTC
GATGCCGCAC TCACCTACAT GCCGCACGGC CTGTGCATGA TCGACGGCGA GAGCCGCGTG
ATCGTCGCGA ACCGCCGCAC CGCGCAGCTG TTCGGCTCGC CGCGCGAGAT CATGCTGGAC
ACCCCGCTGC CCGACGTGAT CGCGGCGCTC GGCGCGAACG CGGAGACCGA TCCCGGCCAG
ACAGGCCTCG CCGCGCAGTG CGCGGCGTGG CTGAACCGCG ACGAACCCGT GCCGCTCGAC
ATCGCGCTCG CCGACGGTCG CCAGCTCGAA CTGACGCGCC ATCGCGTCCC GGACGGCAAC
GCGGTGGTCA TCGTCGAGGA CGTCACCACG CGCCGCCGCG CCGAGCAGCA CATCCGGCAC
CTCGCGCGGC ACGACGCGCT GACCGGCTTG CCGAACCGTC ACGAATTGCA TGCGGAACTC
AGGCGCAGGC TCGCGCACCG GCCGCGCGTG CCGAGCCCCG CGCTCGCCGT CATGTATCTC
GATCTCGACG GCTTCAAGGC GATCAACGAC CGGTTCGGAC ACCAGGCTGG CGACGAGGTG
CTCACGCAGG TCGCCGAGCG GCTCGGCAAG ACGCTGCCGC CCGGCGAGCT GGCGGCTCGC
ATCGGCGGCG ACGAGTTCGT CGTCGCGATC GACGACACGA CGATGCAGGC ATGCTCGATC
CTCGCCGCGC GCATCATCCG GCAGATTTCG GCGCCGTACA CGCTGTCGAT CGGCGCGACC
GTCAGCCTCG GGATCAGCAT CGGCATCGCG CTCGACGACG GACACGGCTC GCCCGACGAA
CTGATCCGGC AGGCCGACAG CGCGCTGTAC GACGCGAAGT CGGGCGGCAA GGGGATCTAC
CGCTTCTATT CGGCGGGAAG CCGCCGCATG GCGCCGGCGA CCGCGAACTG A
|
|---|
| Protein sequence | MAVKARLLNA VLATPPSGNH RVTAALRPSM LGTLFEDVRP MALSGVASAF VAAIALIRLQ
QLWCFVWLVV DVGLLVARLA IARAYAVRRA AGDDRAEYFA RHYAPVSLAA CLLLGLGVMG
CVDASDAELG TLSVMVAGGV FGGIASRNSA LPRLAMTQVT LGVLPIGVGA LLARRPDAWL
LLPPLVIYLA AMRTVVQRHY RVLVALIAAR QRNAELVARF DAALTYMPHG LCMIDGESRV
IVANRRTAQL FGSPREIMLD TPLPDVIAAL GANAETDPGQ TGLAAQCAAW LNRDEPVPLD
IALADGRQLE LTRHRVPDGN AVVIVEDVTT RRRAEQHIRH LARHDALTGL PNRHELHAEL
RRRLAHRPRV PSPALAVMYL DLDGFKAIND RFGHQAGDEV LTQVAERLGK TLPPGELAAR
IGGDEFVVAI DDTTMQACSI LAARIIRQIS APYTLSIGAT VSLGISIGIA LDDGHGSPDE
LIRQADSALY DAKSGGKGIY RFYSAGSRRM APATAN
|
|---|
| |