Gene BamMC406_4249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4249 
Symbol 
ID6180784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1305304 
End bp1307358 
Gene Length2055 bp 
Protein Length684 aa 
Translation table11 
GC content70% 
IMG OID641684018 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_001810929 
Protein GI172063278 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.136482 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACGCC AGCCACTCGT GGCTGGCGTC GCTGCACTGT TCGCCGGCGC GGCGCTGTCG 
CTCGGCGTCG CGCTGCTGGT GCGCGAGCAG TGGCAAGGCG CCGTGCATAC GCGCTTCGAA
CGCCGCACGT CGCACGTGAC GGCGATGCTG CGCCACGAGT TGCAGACCGG CGCCGCCGTG
CTCGAAAGCG CGCGCGGCGC GTTCCTGCTC GCGCCGCAGA TGACACCCGA GCAATGGCGC
CGGTATGCCG ACACGCTCGA GCTCGACAGC GGCCGTTCGC CGGTCCGGCA GCTCGGCTAT
GCGCCGCTGT CGCCCGCGAC ACGCAGCGCG CTCGCCGGCG ACGCGCCGCT GCCGGCCGGC
CCGTTCGCGG TCGCGACGCT CAGCGCGCCG CTGTCGAGCG CGGCCGGCGC GCGCTTCGGC
GCACCGGATC AGGCGCCGCT GGCACGCGCG CTGCGCACCG GCAATGTCGC GCTCGGCATC
CATCCGGCCG ACGACGATAC GTCCCGCGAT ACCCGCATCC TCATGCTGTT CGTGCCGGCG
ACGCCTTCAT CGCGCACGCC CGTCACGCCA GCCGGCGCCC ATGACACGGG TGTCGGCGGC
GTGCTGTTCG CGGAACTCAG CCCGAATCGC GTGGTGGAGC GCGCGCTCGA CGCGGAACGG
GGGCTCGACC TGCGGATGAG CGCCGGCGAC GATCCGCATC CGATCGCGAG CGCGGAGACG
ACGACCGACG AGGCCTCCAC GTCGCCCGAC CTGATGCGCC GCACCGACCA GCTGAATTTC
GGCGGCACCG TGCTGACGCT CGCCTATTCC GCGGACGGCC GCCCGAGCGC GACCGGCGCG
CAGCGCGCGG CGGGCACGGT GCTCGCCGCC GGGCTGATCG CGTCGTTCGC GTTCGCGGCA
CTCATCCATG CACTGCTGCG CGGCCGCGCC GGGACGGCCG ATACCGGCGC CAGCAGCCGC
GGCATCCTCA ACGAGGCGCG GATGATGGGC ATCATCCGTT CGTCGATGGA AGCGATCATC
ACGATCGACG AGAAGCAGAC GGTTGTCATC TTCAATCCGA TGGCCGAACA GGTATTCGGC
GTGTCGGCGA TGGAGGCGAT CGGCGCGCCG CTGTCGCGCT TCATCCCCGA GCGGTTTCGC
ACCGCGCATG CGAAGCATGT CGACCAGTTC GGCGTGACCG GCGTGTCCGA GCGCCAAATG
GGCCGCCAGC GCGTGCTGTT CGGGCTGCGC GGCAACGGCG AGGAATTTCC GATCGAGGCG
TCGATCTCGC AGATCCGCGA TGCATCGGGC AAGCTCTATA CGGTGATGCT GCGCGACATC
ACGGAGCGGC AGCGCGCGGA GAACGCGCTG AAGCAGTCGC GCGAGGAACT GCGCGAACTC
TCGGCGAACC TGCAGAACGT ACGCGAAGAG GAAAAGACCC GCATCGCGCG CGAACTGCAC
GACGATCTCG GCCAGCAACT GACCGCGCTG AAGATGGATC TGTCGGTGAT CGAGCAGCAA
CTGCGCGCGC CGGGCCGTGC GCAACCCAAC GACGACGTGC TGTCGCACCT GCAGGGCATG
CGCCGTCTGA TCGATGCAAC CGTCGCGTCG GTGCGGCGCA TCGCAGCCGA CCTGCGTCCG
GTGATGCTCG ACGATCTCGG CCTCGTGCCC GCGATCGAGT GGCTGGCGAA CGACTTCACG
AACCGCTACG GCATCGACGT CGAACGCCAC ATCGAAACGG GCGGGCTCAC GTTCACCAGC
GCGGGGGCGA CCACGCTGTT CCGGATCGTC CAGGAAGCGC TGACGAACGT CGCGCGCCAC
GCCGATGCGA CCCGCGTCGC GCTGCGGCTC GACATCGAGG AAGGCTTCTG CGTACTGCGC
GTCGCGGACA ACGGCCGCGG CGCGGCACCG GGCGGCAGCG CCCACGAGGA TAAATCGTTC
GGGCTGATCG GCATTCGCGA ACGCGCACAC ATGCTGGGCG GCAACGTGAC GATCGACACC
GCGCTCGCGC GCGGCTTCTC GATCACCGTC GCCTTCCCGC TCGGCACAGT TCACCAGGAA
ACCACCCTCA CATGA
 
Protein sequence
MLRQPLVAGV AALFAGAALS LGVALLVREQ WQGAVHTRFE RRTSHVTAML RHELQTGAAV 
LESARGAFLL APQMTPEQWR RYADTLELDS GRSPVRQLGY APLSPATRSA LAGDAPLPAG
PFAVATLSAP LSSAAGARFG APDQAPLARA LRTGNVALGI HPADDDTSRD TRILMLFVPA
TPSSRTPVTP AGAHDTGVGG VLFAELSPNR VVERALDAER GLDLRMSAGD DPHPIASAET
TTDEASTSPD LMRRTDQLNF GGTVLTLAYS ADGRPSATGA QRAAGTVLAA GLIASFAFAA
LIHALLRGRA GTADTGASSR GILNEARMMG IIRSSMEAII TIDEKQTVVI FNPMAEQVFG
VSAMEAIGAP LSRFIPERFR TAHAKHVDQF GVTGVSERQM GRQRVLFGLR GNGEEFPIEA
SISQIRDASG KLYTVMLRDI TERQRAENAL KQSREELREL SANLQNVREE EKTRIARELH
DDLGQQLTAL KMDLSVIEQQ LRAPGRAQPN DDVLSHLQGM RRLIDATVAS VRRIAADLRP
VMLDDLGLVP AIEWLANDFT NRYGIDVERH IETGGLTFTS AGATTLFRIV QEALTNVARH
ADATRVALRL DIEEGFCVLR VADNGRGAAP GGSAHEDKSF GLIGIRERAH MLGGNVTIDT
ALARGFSITV AFPLGTVHQE TTLT