| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4216 |
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| Symbol | |
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| ID | 6179575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1270756 |
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| End bp | 1271898 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641683985 |
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| Product | porin |
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| Protein accession | YP_001810896 |
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| Protein GI | 172063245 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.951814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.390513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAA CCCTGATTGC CGCCGCCTCC GCCACCGCAC TCTTCGCCCC GCTCGCGCAC
GCGCAGAGCT CGGTCACGCT GTACGGCCTG ATCGACGCAG GCATCGCGTA CACCAACAAC
GTGAACGGCG GATCCCAGTG GCGAATGACC ACCGGCACCA TCAACGGCAG CCGCTTCGGC
CTGCGCGGCA CCGAAGATCT CGGCGGCGGC CTGAAGGCGC TGTTCGTGCT GGAGAACGGC
TTCAACGCGA ACAACGGCGC GCTCGGCCAG GACGGCAAGC TGTTCGGCCG CCATGCATAC
GTCGGCCTGA GCCGCATCGG CTTCGGCACG CTGACGCTCG GCCGCCAGTA CGACACGATG
GTCGACTTCG TCGCGCCGCT GTCCGCGACG GCCGGCGACT TCGGCGATAC GGGCTTCGCG
CATCCGTTCG ACAACGACAA CCTGAACCAT TCGGTGCGCA TCAACAACGC GGTCAAGTAC
ACGAGCGACA CGATCGCGGG CTTCAAGGTC GGCGCGCTGT ACGGCTTCTC GAACTCGACG
AACTTCGCCG GCAACCGCGC GTACAGCGTC GCGGCGAGCT ACACGAACGG CCCGCTGAAG
CTGGCCGGCG CGTACCTGCA GATGAACGGC ACGAAGGGTT CGACGAGCGC GAGCCCCGGC
GCGACCGACG TGGCCGAAGC GAAGAGCGTG AGCCAGGGCG GCTGGTCGGT AGGCGCGGAC
CGCATGCGCA CGTACGGTGG CGGCGTCAGC TACGGGTTCG GTCCGGCAAC GGTCGGCTTC
GTCTATACGC GTTCGCAGTA CGACAACTCG GGCTCGTTCG GCTCCACCGG CCAGGTCGCG
TTCAACAACT ACGACGTGAA CGTGCGCTAT GCGGTGACGC CGGCCGTCAG CCTCGGCGCG
GCCTACGTGT ACACGGACGC CAGCGTGTCG AACCCGGACA GCAAGCACGG CACCGATCCG
AAGTGGCACC AGGTCGACCT GCAGGCGGTG TACAAGCTGT CGCGCCGCAC CGACCTGTAC
GCGGAAGCGA TGTACCAGCA CGCATCGGGC CGCGGCTACC AGGCGTTCAT CAACACGTCG
GGCGGCGCAT CGAGCACCGC GAACCAGATC GTCGGCACGA TCGGCATGCG CACGCGGTTC
TGA
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| Protein sequence | MNKTLIAAAS ATALFAPLAH AQSSVTLYGL IDAGIAYTNN VNGGSQWRMT TGTINGSRFG
LRGTEDLGGG LKALFVLENG FNANNGALGQ DGKLFGRHAY VGLSRIGFGT LTLGRQYDTM
VDFVAPLSAT AGDFGDTGFA HPFDNDNLNH SVRINNAVKY TSDTIAGFKV GALYGFSNST
NFAGNRAYSV AASYTNGPLK LAGAYLQMNG TKGSTSASPG ATDVAEAKSV SQGGWSVGAD
RMRTYGGGVS YGFGPATVGF VYTRSQYDNS GSFGSTGQVA FNNYDVNVRY AVTPAVSLGA
AYVYTDASVS NPDSKHGTDP KWHQVDLQAV YKLSRRTDLY AEAMYQHASG RGYQAFINTS
GGASSTANQI VGTIGMRTRF
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