| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4162 |
|---|
| Symbol | |
|---|
| ID | 6180250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1205695 |
|---|
| End bp | 1206849 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641683931 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001810842 |
|---|
| Protein GI | 172063191 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.80712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.28462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGT GGGCGGGCCT GCGCGAATCG TTCTCGATCG CGCGCTGGTG GAGCATCGTG
CTGAAGGAAT TCCTGCAGCT GCGCCGCGAT CGCGTCACGT TCGCGATGAT CGTCGGTGTG
CCGATCATCC AGCTCGCGCT GTTCGGCTTC GCGATCAACA CCGATCCGAA GCACCTGCCG
ACCGCGGTGA TCGTCGCCGA TTCGAGCCCC TTCGCACGCA GCTTCATCGC CGCGATGCGC
AACTCCGCGT ACTTCGACAT CGTCGCGACC CTGCCCGACG AAGCGGCCGG CCGGCAGGCG
CTCGCGCGCG GCGACGTGCA GTTCGTGCTG AGCGTGCCGG CCGATTTCTC GAAGCGGCTG
CTGCGCGGCG AGCATCCGTC GCTGCTCGTC GAGGCGGACG CGACCGATCC CGTCGCGACC
GCATCCGCGA TCGGCGCGCT GACGGGTCTC GTGCAGCCCG TCGCGGACAA GGACCTGACG
GGCCCGCTCG CGCGCCTGAA CGGCCGCCCG GCCGCGTTCG ACGTCGTGCT GCACCGTCTG
TACAACCCCG AGGGCATCAC GCAGTACAAC GTCGTGCCGG GCCTGATGGG CGTGATCCTG
ACGATGACGA TGGTGATGAT GACCGGCCTC GCGATCACCC GCGAACGCGA GCGCGGCACG
ATGGAAAACC TGCTCGCGAC ACCCGTGCGG CCGCTCGAGG TGATGACGGG CAAGATCGTC
CCGTACGTGT TCATCGGGCT GATCCAGGTG TCGATCATTC TCGCGGCCGC GCGGTACGTG
TTCGAGGTGC CGTTCGTCGG CGGCGTGTTC GCGATCTACC TCGCCGCGCT GCTCTTCATC
GCCGCGAACC TGACGGTCGG CATCACGCTG TCGTCGCTCG CGCAGAACCA GTTGCAGGCG
ATGCAGCTCG CGGTGTTCTA CTTCCTGCCG AACATCCTGC TGTCGGGCTT CATGTTCCCG
TTCGCCGGGA TGCCGAAGTG GGCGCAGTTC ATCGGCAACC TGCTGCCGCT CACCTACTTC
AACCGCCTCG TGCGCGGCAT CCTGCTGAAA GGCAACGCCT GGGCCGACCT GTGGCCGTCC
GTGTGGCCCG TCGCGCTGTT CACCCTCGTC GTGATGAGCG TCGCGCTGCG CTTCTACCGG
CGCACGCTCG ATTAG
|
|---|
| Protein sequence | MNAWAGLRES FSIARWWSIV LKEFLQLRRD RVTFAMIVGV PIIQLALFGF AINTDPKHLP
TAVIVADSSP FARSFIAAMR NSAYFDIVAT LPDEAAGRQA LARGDVQFVL SVPADFSKRL
LRGEHPSLLV EADATDPVAT ASAIGALTGL VQPVADKDLT GPLARLNGRP AAFDVVLHRL
YNPEGITQYN VVPGLMGVIL TMTMVMMTGL AITRERERGT MENLLATPVR PLEVMTGKIV
PYVFIGLIQV SIILAAARYV FEVPFVGGVF AIYLAALLFI AANLTVGITL SSLAQNQLQA
MQLAVFYFLP NILLSGFMFP FAGMPKWAQF IGNLLPLTYF NRLVRGILLK GNAWADLWPS
VWPVALFTLV VMSVALRFYR RTLD
|
|---|
| |