| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4140 |
|---|
| Symbol | |
|---|
| ID | 6181528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1180262 |
|---|
| End bp | 1181362 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641683910 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001810821 |
|---|
| Protein GI | 172063170 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0884015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.2219 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTTG CACCGAAACA GCTCGCCGCC GCGCTGGCGA TCGTCCTGGG CACCGCCGCC
GGCGCTGCCG TCGCGCAGGT TCCGGCCGGA TATCCGGGTA ACTACCAGGG TGTCGTCGAC
GCCGCGAAGA AGGAAGGAAA ACTGATCGTC TACTCGACGA CCGACACGGG CCTCGTGCGC
CCGCTGATCA AGGACTTCGA AAGCCTGTAC GGGGTGAAGG TCGAGTACAA CGACATGAAC
AGCACCGAGC TGTACAACCG CTACATCAGC GAGAACGCGG CCAGCAGCAC CAGCGCCGAC
GTGCTGTGGA GCTCCGCGAT GGACCTGCAG GTCAAGCTCG TCAACGACGG CCTGATGGCG
TCGTACGATT CGCCTGAAAG CCCGAACGTG CCGCAATGGG CGCAATACCA GAAGCAGGCG
TACGGCACGA CCTTCGAGCC GCTCGCGATC GTCTACAACA AGCGCCTGAT CCCCGAGAAC
GAGGTGCCGA AGACGCGCGC CGACCTGATC AAGCTGCTCA CCACGCAAGC CGACAAGTTC
AAGGGCAAGG TCACGACCTA CGACATCGAG AAGTCGGGAG TCGGCTTCAA CTACCTGACG
CAGGACGCGC ACGTGAACGA GAAGGTCACG TGGGAACTCG TGAAGGCGAT CGGCGCGACC
GGCCCGAAAC TGCAGTCGAG CACCGGCGCG ATGATGGAGC GGATTTCGTC GGGCGAGAAC
CTGATCGGCT ACAACATCAT CGGCTCGTAT GCGTACTCGA AGGCGAAGAA GGACAAGTCG
ATCGGCTACG TGTTTCCGAA GGACTACACA CAGGTCGTGA GCCGCCTCGC CACGATCTCG
AAGAAGGCGA AGAATCCGAA CGCCGCGAAG CTGTGGGTCG ACTACCTGCT GTCCAAGCGC
GGCCAGACGG TGATCGCGAA CCAGGTGGAC CTGTACGCGA TCCGCACCGA CGTGAGCGGC
GAAACGTCGG CCGCGAGCCT CACGAAGGAA CTCGGCGATT CGCTGAAGCC GATCCCGATC
GGCACGGGTC TGCTCGTCTA CCTCGACCAG TCGAAGCGGC TCGCGTTCCT GAAGCAATGG
CAGCAGGCGA TCAAGCGCTG A
|
|---|
| Protein sequence | MPFAPKQLAA ALAIVLGTAA GAAVAQVPAG YPGNYQGVVD AAKKEGKLIV YSTTDTGLVR
PLIKDFESLY GVKVEYNDMN STELYNRYIS ENAASSTSAD VLWSSAMDLQ VKLVNDGLMA
SYDSPESPNV PQWAQYQKQA YGTTFEPLAI VYNKRLIPEN EVPKTRADLI KLLTTQADKF
KGKVTTYDIE KSGVGFNYLT QDAHVNEKVT WELVKAIGAT GPKLQSSTGA MMERISSGEN
LIGYNIIGSY AYSKAKKDKS IGYVFPKDYT QVVSRLATIS KKAKNPNAAK LWVDYLLSKR
GQTVIANQVD LYAIRTDVSG ETSAASLTKE LGDSLKPIPI GTGLLVYLDQ SKRLAFLKQW
QQAIKR
|
|---|
| |