| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4066 |
|---|
| Symbol | |
|---|
| ID | 6181060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1089090 |
|---|
| End bp | 1093607 |
|---|
| Gene Length | 4518 bp |
|---|
| Protein Length | 1505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641683836 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001810747 |
|---|
| Protein GI | 172063096 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCA CCGCCACCCG CCCCGCCCAC GCGCTCGACG TGTTCCACCC GGCCGTCGCC
GCATGGTTCC GCCGCACGTT CGCCGCGCCG ACCGGCGTGC AGGCGCTCGC GTGGCCGCAC
ATCAAGGCCG GCCGGTCGAC GCTCGTGGCC GCGCCGACCG GCTCCGGCAA GACGCTCACC
GCGTTCCTGT GCGCGCTCGA CGATCTCGTG CGCGACGCGC TCGCGCACGA CGGCGCACTG
CCCGACGCGA CGCTCGTCGT CTACGTGTCG CCGCTCAAGG CGCTGTCGAA CGACATCCAC
GTGAACCTCG ACGCGCCGCT CGCCGGTATC GCCGAATCGC TCGCGCAGCT CGGCTTGCCG
GTGCCTGCGA TCCGCACCGC CGTGCGCACC GGCGACACTC CGCAGACCGA ACGCGCGGCG
CTGCGCAAAC GCGCGCCGCA CATCCTCGTG ACGACGCCCG AGTCGCTGTA CGTGTTGTTG
TCGTCGACGT CGGGACGGCA GATGCTGTCG AGCGTGCGTT CGGTGATCGT CGACGAGATC
CACGCGCTCG CATCGTCCAA GCGCGGCAGC CATCTCGCGC TGTCGCTCGA ACGCCTCGAT
GCGTTGACGG GCCGCGCGTT GCCGCGCATC GGATTGTCGG CCACGCAGAA ACCGATCGAG
GCGGTTGCGC GCTTCCTGGT TGGCGGTCCG GCCGATGCGC CGCGCGACTG CACGATCGTC
GACACCGGTC ACACGCGTGA ACGCGACCTC GCGCTTGAAC TGCCGAACGT GCCGCTCGGG
CCGGTGATGG CGACCGACGT GTGGGAACAG GTGTACGACC GGATCGCCGC GCTCGCGGCC
GCGCATCGCA CGACGCTCGT GTTCGTGAAC ACGCGGCGCA CCGCGGAGCG CATGGCGCGC
CATCTCGCCG AGCGCCTCGG CAAGGACGCG ATCGCCGCGC ACCACGGCAG TCTCGCGAAG
GAACATCGCT TCGACGCGGA ACAGCGGCTC AAGCGCGGCG AGCTGAAGCT GCTCGTCGCG
ACCGCATCGC TCGAACTCGG CATCGACATC GGCGACGTCG ACCTCGTGTG CCAGGTCGGT
TCGCCGCGCG GGATCGCACC GTTCCTGCAG CGCGTCGGCC GCTCCGGGCA CCATGTCGGC
GGCGTGCCGA AAGGTCGCCT GTTCCCGTTG TCGCGGGACG AGCTGGTCGA ATGCGCGGCG
CTGCTCGACT GCGTGCAGCG CGGCGAGCTC GACGCATTGC GGATTCCCGA GGCGCCGCTG
GACGTGCTCG CGCAACAGAT CGTCGCCGAA GTCGCCTGCG CGGAATGGCA CGAGGATGCG
CTGTACGCGA GCTTCACGCG CGCGGCGCCG TACGCGCGCC TGTCGCGCGA ACGCTTCGAC
GAGGTCATGA AGATGCTCGC CGAAGGCTTC ACGAGCCGCC GCGGCGTGCG CGGCGCGTAT
CTGCATCGCG ACGTGGTCGG CGGCACGGTG CGTGGACGCC GCAACGCGAT GATGACCGCG
ACGACCTCGG GCGGCACGAT TCCCGACATG GCCGACTACG CGGTGTTGCT CGAACCGCAG
GGCATCCAGG TCGGCACCGT CAACGAGGAT TTCGCGGTCG AGAGCCTGGC CGGCGACGTG
TTCCAGCTCG GCAACCAGTC GTACCGGATC ATTCGCGTGG AAACGGGCCG CGTGCGCGTC
GAGGATGCAC AAGGCCAGTC GCCGAGCATT CCGTTCTGGC TCGGCGAGGC GCCCGGGCGC
AGCGACGAAC TGTCGGCCGC GGTCGGCCGG CTGCGCGCGC GGCTCGACGC GCTGTTCGCC
GAAGGCGATC GAAACACGGA TGCCGGCGGG CGCAAGCGCG GTGCGAGCGG TGCGAACGGC
GATGCAGCCG GCAAGACGGC CACGCGCGGC AAAGCCAAAC GAGGCGAGGA AACCCCGGCC
GTCGCCGAAT CGCGCAGCGA TGCCGACGGC ACCGCGATCG TCCCGGCCGA AAGCCGCCTC
GCGCCGGCGC TGCGCTGGCT CGCCGACGAT CTGCACCTGG CTCCGGACGC GGCACGCCAG
ATCGTCGACT ACCTCGCCCG CACGCGCGCG GCGCTCGGCG CGCTGCCCAC GCAGGACACG
CTCGTGATGG AGCGCTTCTT CGACGAGTCG GGCGGCACGC AGCTGGTGAT CCATTCGCCG
TTCGGCAGCC GCATCAACCG CGCGTGGGGG CTCGCGCTGC GCAAGCGCTT TTGCCGCACG
TTCGACTTCG AGCTGCAGGC CGCCGCGACC GACGACGCGA TCGTTCTTTC GCTGTCGCTC
GCGCACAGCT TCGCGCTCGA CGAAGTGTGG CGTTACCTGC GCTCGGCCAG CGCCGAACAT
GTGCTGATCC AGGCGCTGCT CGACGCGCCG ATGTTCGGCG TGCGCTGGCG CTGGAACGCG
ACGACCTCGC TCGCGCTGCC GCGCTTCACC GGCGGCCGGC GCACCGCGCC GCAACTGCAG
CGGATGAAGA GCGACGACCT GCTCGCGACC GTGTTTCCCG AACAGGTTGC GTGCCTGGAA
AATATTGTCG GCGAACGCGA GATCCCGCAC CACCCGCTCG TCGACCAGAC GCTCGACGAT
TGCCTGCACG ACGCGATGGA TACCGACGGC TGGCTTGCGC TGCTGCGCCG GATCGAAAGC
GGCGCGATCG AACTGATCGC GCGCGACCTG CCCGCGCCGT CGCCGCTCGC GGCCGAGATC
CTGAACGCGA AGCCCTATGC GTTCCTCGAC GACGCGCCGC TCGAAGAGCG CCGCACGCAG
GCCGTGCAGT CGCGCCGCTG GAGCGACCCC GAGTCGGCCG ACGATCTCGG CGCGCTCGAC
GCCGATGCGA TCGATGCGGT GTGCGACGAA GCGTGGCCGC TCGTGCGCGA TGCCGACGAA
ATGCACGACG CGCTGCTCAC GCTCGCGTGC GTCGCCGACA GCGAAGCGCG GGCGCACGAC
GGCTGGCCCG AGCAGCTCGC GGAATTGGCC GAACGCCGTC GCGCGACCCA ACTCGTCACA
CCGGATGGCG CCGCGCTGTG GGTGCCGGTC GAGCGGCTGG TCTGCATCCG CGCGCTGCAT
CCCGACGCAC GTGTCGCACC CGCGCTGAAG GTGCCGGCCG CGTGCGCGCA GCCATGGGAC
GCCGACGCCG CGCTCGTCGA CGTGATCCGC GCGCGGCTCA CCGGATTCGG GCCGCTGACG
CTCGACGCCA TCGCACAGCC GCTCGGCCTG CCGCCCGCGA CGATCGCGAC GGCGCTCGCG
GCACTGGAGC GCGAAGGCTA CGTGATGCGC GGCCGCTTCA CACCCGGCGC GACGACCGAC
GAATGGTGCG AACGCCACCT GCTCGCGCGC ATTCATCGCT ATACGGTGAA ACGACTGCGC
CGCGAGATCG AGCCCGTCGA GCGCGCCGAT TTCATGCGCT TCCTGTTCCA CTGGCAGCGC
CTGACGCCCG ATACGCGCGG AACCGGCCGC GACGCGCTCG CGGCCGTCGT CGAGCAGCTC
GAAGGCTACG AAGCCGCGGC GAGCGCATGG GAAGACGCGC TCCTGCCCGC ACGGCTGACC
GACTATACGG CCGGCGGCCT CGACGATCTG TGCCGCTCGG GCAAGCTCGT GTGGACCCGC
ATCGGCGCAC CGGCCCGCGC GGCCGGCACG CCCGTGAAGA CGACGCCGGT CGTGCTGCTG
CCCCGCCGCC ACCTCGGCGC ATGGCAGGCG CTGCGCGACC CGGACGCGCA ACCGGCGCTG
TCCGCGCGCG CGACGCAGGT GCGGGACGCG CTCGCCGCCC ATGGCGCGAT GTTCTTCGAT
GCACTGCTCG ACGAACTGCA CATGCTGCCC GTCGAACTCG AACAGGCACT CGGCGAACTC
GTATCGGCCG GCCTCGTGAA TGCCGACAGC TTCGCCGGAC TGCGCGCATT GCTGAAGCCG
GCGGTCAAGC GCAGCGCGAC GTATGCGCCG CGCACGCGGC GCGGCGGCGC ACTGATCGGC
GGGATGGACG ATGCGGGCCG CTGGGCACTC GTGCAACGCG TTTCGCCACC GAACGACGAC
GCGCCAACCC CGGCACCGAA GCGCGGCGCG CCCGCGACCG ATCCCGCCGC GCTCGAACAC
ATCGTCTGGA CGCTGCTGCG CCGCTACGGT GTCGTGTTCT GGCGGCTGCT CGAACGCGAA
GCCGACTGGC TGCCGAGCTG GCGCGAGCTC GTGCGCGTGC TGCAGCGGCT CGAAGCGCGC
GGCGAGATTC GCGGCGGACG CTTCGTCGCC GGGCTCGCGG GCGAGCAGTT CGCGCTGCCG
GAGGCGATCC CGATCCTGCG CGAACTGCGT CGCCAACCGG GCGACGGCCA GTATGTGTGC
GTGACGGGTG CCGATCCGCT GAACCTTGCC GGCACGCTGC TGCCCGGCGA CAAGGTGCCC
GCGCTGGCCG GCAATCGCGT GCTGTTCCGC GACGGCGTGC CCGTCGCGTC GCTCGTGTCG
GGCGCGTTCC ACTACGCGCC CGAGCTGCCG CCTGCCGCGC GCGAGGATGC GCGCCTGCGT
CTCGCCCGCC GCTACTGA
|
|---|
| Protein sequence | MDVTATRPAH ALDVFHPAVA AWFRRTFAAP TGVQALAWPH IKAGRSTLVA APTGSGKTLT
AFLCALDDLV RDALAHDGAL PDATLVVYVS PLKALSNDIH VNLDAPLAGI AESLAQLGLP
VPAIRTAVRT GDTPQTERAA LRKRAPHILV TTPESLYVLL SSTSGRQMLS SVRSVIVDEI
HALASSKRGS HLALSLERLD ALTGRALPRI GLSATQKPIE AVARFLVGGP ADAPRDCTIV
DTGHTRERDL ALELPNVPLG PVMATDVWEQ VYDRIAALAA AHRTTLVFVN TRRTAERMAR
HLAERLGKDA IAAHHGSLAK EHRFDAEQRL KRGELKLLVA TASLELGIDI GDVDLVCQVG
SPRGIAPFLQ RVGRSGHHVG GVPKGRLFPL SRDELVECAA LLDCVQRGEL DALRIPEAPL
DVLAQQIVAE VACAEWHEDA LYASFTRAAP YARLSRERFD EVMKMLAEGF TSRRGVRGAY
LHRDVVGGTV RGRRNAMMTA TTSGGTIPDM ADYAVLLEPQ GIQVGTVNED FAVESLAGDV
FQLGNQSYRI IRVETGRVRV EDAQGQSPSI PFWLGEAPGR SDELSAAVGR LRARLDALFA
EGDRNTDAGG RKRGASGANG DAAGKTATRG KAKRGEETPA VAESRSDADG TAIVPAESRL
APALRWLADD LHLAPDAARQ IVDYLARTRA ALGALPTQDT LVMERFFDES GGTQLVIHSP
FGSRINRAWG LALRKRFCRT FDFELQAAAT DDAIVLSLSL AHSFALDEVW RYLRSASAEH
VLIQALLDAP MFGVRWRWNA TTSLALPRFT GGRRTAPQLQ RMKSDDLLAT VFPEQVACLE
NIVGEREIPH HPLVDQTLDD CLHDAMDTDG WLALLRRIES GAIELIARDL PAPSPLAAEI
LNAKPYAFLD DAPLEERRTQ AVQSRRWSDP ESADDLGALD ADAIDAVCDE AWPLVRDADE
MHDALLTLAC VADSEARAHD GWPEQLAELA ERRRATQLVT PDGAALWVPV ERLVCIRALH
PDARVAPALK VPAACAQPWD ADAALVDVIR ARLTGFGPLT LDAIAQPLGL PPATIATALA
ALEREGYVMR GRFTPGATTD EWCERHLLAR IHRYTVKRLR REIEPVERAD FMRFLFHWQR
LTPDTRGTGR DALAAVVEQL EGYEAAASAW EDALLPARLT DYTAGGLDDL CRSGKLVWTR
IGAPARAAGT PVKTTPVVLL PRRHLGAWQA LRDPDAQPAL SARATQVRDA LAAHGAMFFD
ALLDELHMLP VELEQALGEL VSAGLVNADS FAGLRALLKP AVKRSATYAP RTRRGGALIG
GMDDAGRWAL VQRVSPPNDD APTPAPKRGA PATDPAALEH IVWTLLRRYG VVFWRLLERE
ADWLPSWREL VRVLQRLEAR GEIRGGRFVA GLAGEQFALP EAIPILRELR RQPGDGQYVC
VTGADPLNLA GTLLPGDKVP ALAGNRVLFR DGVPVASLVS GAFHYAPELP PAAREDARLR
LARRY
|
|---|
| |