Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4027 |
Symbol | |
ID | 6181514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 1044799 |
End bp | 1046658 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641683797 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_001810708 |
Protein GI | 172063057 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.905067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.428088 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCACAT ACCGTTCCAA AACCTCCACC GCCGGCCGCA ACATGGCAGG CGCGCGCTCG CTGTGGCGCG CCACCGGCAT GAAAGACGAC GATTTCTCGA AGCCGATCAT CGCGGTCGTC AACTCGTTCA CGCAGTTCGT GCCCGGGCAC GTGCACCTGA AGGATCTCGG CCAGCTCGTC GCGCGCGAGA TCGAGGCCGC CGGCGGCGTC GCGAAGGAAT TCAACACGAT CGCGGTCGAC GACGGCATCG CGATGGGCCA CGACGGCATG CTCTATTCGC TGCCGAGCCG CGACATCATC GCCGACTCCG TCGAATACAT GGTGAACGCG CACTGCGCGG ACGCGATGGT GTGCATCTCG AACTGCGACA AGATCACGCC GGGGATGCTG ATGGCCGCGA TGCGCCTCAA CATCCCGGTG ATCTTCGTGT CGGGCGGGCC GATGGAAGCC GGCAAGACGC GTCTCGCGAA CCCGGTCACC AAGACCGTCG AACTGAAGAA GCTCGACCTC GTCGACGCGA TGGTGATCGC GGCCGACCCG GCGTATTCGG ATGCCGACGT CGCCGAAGTC GAACGCTCGG CGTGCCCGAC CTGCGGTTCG TGCTCGGGCA TGTTCACCGC GAACTCGATG AACTGCCTGA CCGAAGCGCT CGGCCTGTCG CTGCCCGGCA ACGGCACGGT CGTCGCGACG CACGCCGATC GCGAGCAACT GTTCAAGCGC GCCGGCCGCC GCATCGTCGA GCTGACCCGC CAGCACTACG AGCAGGACGA CATGCGCGCG CTGCCGCGCT CGGTCGGCTT CAAGGCGTTC GAGAACGCCA TGACGCTCGA CATCGCGATG GGCGGTTCGA CCAACACGAT CCTGCACCTG CTGGCGATCG CGCAGGAAGC CGGCATCGAC TTCACGATGA AGGACATCGA TCGCCTGTCG CGCAGCGTGC CGCAGCTGTG CAAGGTCGCG CCGAACACGA ACAAGTACCA CATCGAGGAC GTGCACCGCG CGGGCGGCAT CATGGCGATC CTCGGCGAGC TCGACCGCGC CGGCAAGCTG CACACCGACG TGCCGACCGT GCACGCGCCG ACGCTGAAGG ATGCGCTCGA CCAGTGGGAT ATCGTCCGCA CCGACGACCC GGCAGTGCGC ACGTTCTACC AGGCCGGCCC GGCCGGCATC CCGACGCAGG TCGCGTTCAG CCAGGACACG CGCTGGCCGA GCCTCGACCT CGACCGCGCC GAAGGCTGCA TCCGCTCGTA CGAGCATGCG TTCTCGAAGG AAGGTGGCCT GGCCGTGCTG ACCGGCAACA TCGCGCTCGA CGGCTGCGTG GTGAAGACGG CCGGCGTCGA TGAAAGCATC CTCGTGTTCG AGGGCTCGGC CCACGTCACC GAATCGCAGG ACGAAGCGGT CGAGAACATC CTGAACGACA AGGTCAAGGC CGGCGACGTG GTGATCGTGC GGTACGAAGG CCCGAAGGGC GGCCCCGGCA TGCAGGAAAT GCTGTACCCG ACGAGCTACA TCAAGTCGAA GGGCCTCGGC AAGGCATGCG CGCTGCTGAC GGACGGCCGC TTCTCGGGCG GCACGTCGGG CCTGTCGATC GGGCACTGCT CGCCGGAAGC GGCAGCGGGC GGCGCGATCG GCCTCGTCCG CGACGGCGAC AAGATCCGCA TCGACATTCC GAACCGCACG ATCGACGTGC TGGTGTCGGA CGAGGAACTC GCGCGTCGCC GCGAAGAGCA GAACGCGAAG GGCTGGAAAC CGGCGCAACC GCGTCCGCGC AAGGTGTCGG CGGCGCTGAA GGCCTATGCG AAGCTGGTGA TGTCGGCCGA CAAGGGCGCC GTGCGCGACC TGTCGCTGCT GGACGACTGA
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Protein sequence | MPTYRSKTST AGRNMAGARS LWRATGMKDD DFSKPIIAVV NSFTQFVPGH VHLKDLGQLV AREIEAAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSRDII ADSVEYMVNA HCADAMVCIS NCDKITPGML MAAMRLNIPV IFVSGGPMEA GKTRLANPVT KTVELKKLDL VDAMVIAADP AYSDADVAEV ERSACPTCGS CSGMFTANSM NCLTEALGLS LPGNGTVVAT HADREQLFKR AGRRIVELTR QHYEQDDMRA LPRSVGFKAF ENAMTLDIAM GGSTNTILHL LAIAQEAGID FTMKDIDRLS RSVPQLCKVA PNTNKYHIED VHRAGGIMAI LGELDRAGKL HTDVPTVHAP TLKDALDQWD IVRTDDPAVR TFYQAGPAGI PTQVAFSQDT RWPSLDLDRA EGCIRSYEHA FSKEGGLAVL TGNIALDGCV VKTAGVDESI LVFEGSAHVT ESQDEAVENI LNDKVKAGDV VIVRYEGPKG GPGMQEMLYP TSYIKSKGLG KACALLTDGR FSGGTSGLSI GHCSPEAAAG GAIGLVRDGD KIRIDIPNRT IDVLVSDEEL ARRREEQNAK GWKPAQPRPR KVSAALKAYA KLVMSADKGA VRDLSLLDD
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