| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3931 |
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| Symbol | |
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| ID | 6181112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 932309 |
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| End bp | 933727 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641683702 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001810613 |
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| Protein GI | 172062962 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0856952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.304546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGTTCG GTACCCGCAA ACGGTCGACG CCGGAGCCTG CGCCGGCAGT GTCCCCGGCC
GTGCCGCGCG ACGACGCGCC CGCGCCCGCG CCGGCGCCGA TCGCGAGCCA CGCGCCGCCG
CCGTTGCGCG GGGCCGCGGC GGCCGACACG CAGGAGGCGC TGATCCGCTC CGGCAAGTTC
GATGCGATTC GCACCGCGGT GTTCTCGTCG ATGAACATGT CGGCGGCGTT GATGAAGACG
CGCGACGAAG TGCGCACGGG CATCGAGCAG GTGGCCGCGC ACACCGTCGA GCGCGAGCGC
CTGAAGATCA CGGCGGGCGA GCAGGTGCTG ATCGTCGACG CGATCCTGAA CGACATGTTC
GGCGTCGGGC CGATCGAGCC GCTGCTCGCG GACGACACCG TGTCCGACAT TCTCGTGAAC
GGCCCCGACC AGGTGTACGT CGAGCGCGCG GGGCGGCTCG AACTCACGTC GCTGAAGTTT
CGCGACAACG CGCACGTGAC GAGCGTCGCG CAACGGATCG CGGCGGCAGT CGGCCGCCGT
GTCGACGAGA GCAGCCCGAT GGTCGACGCG CGCCTTGCCG ACGGCAGCCG CGTGAACGTG
GTGCTGCCGC CGATCGCGAT GCGCGGCGCG TCGATCTCGA TCCGCAAGTT CGCGAAGCGC
GACATCACGC TTGCGCGGAT GGCGCATCAG GGCAACATCT CGCACGGGAT GCTGCAGGTG
CTGAAGATCG CATGCGCATG CCGGCTGAAC ATTGTGATCT CAGGCGGCAC CGGCTCGGGC
AAGACGACGC TGCTGAACGC GCTGTCGCAG CACATCGAGG AGCACGAGCG GATCGTGACG
ATCGAGGATG CGGCCGAGCT GCAACTGCTG CAGCCGCATG TCGTGAGTCT CGAGACGCGG
CCGGAGAATA CCGAAGGGCT CGGCGGAATC TCGCAGCGCG ACCTCGTGCG CAATGCGCTG
CGGATGCGGC CCGATCGCAT CATCCTCGGC GAAATCCGCG GCGCGGAGGC ATTCGACGTG
CTGCAGGCGA TGAATACGGG CCACGACGGC TCGATGACGA CGATCCACGC GAACACGCCG
CGCGACGCGA TCAGCCGGCT CGAAAGCATG GTGATGATGG CGAACGCGAA CCTGCAGCTG
CTGTCGATCC GGCGCCAGAT CGCGAGCGCC GTGCACCTGT TCGTGCAGAT CGAGCGAATG
CGCGACGGCG TGCGCCGCGT GACCCGGATC ACCGAGATCG TCGGGATGGA AGGCGAGGTC
GTGATCACGC AGGACCTGTT CACGTTCCGG CAGGAAAGCG ACACGACGCG CGATGTGGTG
AAGGGGGTGT TCGAGGCGTC GTCGCTGCGC CCTGCGTTCG CCCCGCGTGC CGCGTACTAC
GGCATGGAGG ACGCGCTCTC CGAGGTATTC CGGCAATGA
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| Protein sequence | MTFGTRKRST PEPAPAVSPA VPRDDAPAPA PAPIASHAPP PLRGAAAADT QEALIRSGKF
DAIRTAVFSS MNMSAALMKT RDEVRTGIEQ VAAHTVERER LKITAGEQVL IVDAILNDMF
GVGPIEPLLA DDTVSDILVN GPDQVYVERA GRLELTSLKF RDNAHVTSVA QRIAAAVGRR
VDESSPMVDA RLADGSRVNV VLPPIAMRGA SISIRKFAKR DITLARMAHQ GNISHGMLQV
LKIACACRLN IVISGGTGSG KTTLLNALSQ HIEEHERIVT IEDAAELQLL QPHVVSLETR
PENTEGLGGI SQRDLVRNAL RMRPDRIILG EIRGAEAFDV LQAMNTGHDG SMTTIHANTP
RDAISRLESM VMMANANLQL LSIRRQIASA VHLFVQIERM RDGVRRVTRI TEIVGMEGEV
VITQDLFTFR QESDTTRDVV KGVFEASSLR PAFAPRAAYY GMEDALSEVF RQ
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