| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3830 |
|---|
| Symbol | sdhB |
|---|
| ID | 6180826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 822365 |
|---|
| End bp | 823066 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641683601 |
|---|
| Product | succinate dehydrogenase iron-sulfur subunit |
|---|
| Protein accession | YP_001810513 |
|---|
| Protein GI | 172062862 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.577483 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC GCATTTTTGA AGTCTACCGC TACGATCCGG ACAAGGACGC GGCGCCGCGC
ATGCAGACGT ACGAGCTCGA GATCCAGCAT GAGCGCATGC TGCTCGACGC ACTGGTCAAG
CTGAAGGCAG TGGACGAGAC GCTGTCGTTC CGCCGTTCGT GCCGTGAAGG CGTGTGCGGT
TCGGACGCGA TGAACATCAA CGGCAAGAAC GGTCTCGCGT GCCTGACGAA CCTGAACGAC
CTGCCGCAGA AGATCGTGCT GCGCCCGCTG CCGGGCCTGC CCGTCGTGCG CGACCTGATC
GTCGACATGA CGCACTTCTT CAACCAGTAT CACTCGATCA GGCCGTACCT GATCAACGAC
GCGCCGCCGC CGGAGAAGGA ACGCCTCCAG TCGCCGGAAG AGCGCGACGA GCTCGACGGC
GTGTACGAGT GCATTCTGTG CGCGAGCTGC TCGACGTCGT GCCCGAGCTT CTGGTGGAAC
CCGGACAAGT TCGTCGGCCC GGCCGGCCTG CTGCAGGCTT ACCGCTTCAT CGCGGATAGT
CGCGACACCG CCACCGGCGA GCGTCTCGAC AACCTGGAAG ACCCGTACCG TCTGTTCCGT
TGCCACACGA TCATGAACTG CGTCGACGTT TGCCCGAAGG GCCTGAACCC GACGAAGGCG
ATCGGCAAGA TCAAGGAACT GATGGTTCGC CGCGCGGTTT GA
|
|---|
| Protein sequence | MAKRIFEVYR YDPDKDAAPR MQTYELEIQH ERMLLDALVK LKAVDETLSF RRSCREGVCG
SDAMNINGKN GLACLTNLND LPQKIVLRPL PGLPVVRDLI VDMTHFFNQY HSIRPYLIND
APPPEKERLQ SPEERDELDG VYECILCASC STSCPSFWWN PDKFVGPAGL LQAYRFIADS
RDTATGERLD NLEDPYRLFR CHTIMNCVDV CPKGLNPTKA IGKIKELMVR RAV
|
|---|
| |