| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3715 |
|---|
| Symbol | |
|---|
| ID | 6179604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 677760 |
|---|
| End bp | 679028 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641683485 |
|---|
| Product | RNA polymerase ECF-subfamily sigma factor |
|---|
| Protein accession | YP_001810398 |
|---|
| Protein GI | 172062747 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.410388 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCGCG AGGCGACCCA TCGTGCGATC GAGGCCGTCT GGCGAATCGA GGCGCCGAAG
ATCATTGCCC GCGCCGCGCG CGTGGTGCGC GACGTCGGCG TGGCCGAGGA ACTCGCGCAG
GACACGCTCG TCGCGGCGCT CGAGCACTGG CCCGTCGACG GCGTGCCCGA CAACCCGGCC
GCATGGCTGA TGACGGCCGT GAAGCGGCGC GCGCTCGACC GGGTCCGGCA GGAGTCGCTG
CACGCGGCGA AGCGCGACCA GCTCGGCCAT GAAATGGACG CGCTCGAAGC GCACGTCGTG
CCCGACATCG CGGAGGCGCT GGCCGATGCG AGCGACGACG ACATCGGCGA CGATCTGCTG
CGGCTGATCT TCACGTCGTG CCATCCTGTG CTGTCGACCG ATGCGCGCGT CGCGCTGACG
TTGCGGCTGC TCGGCGGGCT GACCACGGGT GAGATCGCGC GCGCATTCCT GTCGCCGGAA
CCGACGATCG CGCAGCGCAT CGTGCGCGCG AAGCGCACGC TCGCGGCGGC GCGCGTCCCG
TTCGAGGTGC CGGCCGCCGA CGCGCGGCCG GCGCGGCTCG CGTCTGTGCT CGAAGTGATC
TATCTCGTGT TCAACGAAGG GCATGCGGCA ACGGCGGGCG ACGACTGGAT GCGTCCGGCG
CTGTGCGACG AGGCGCTACG GCTCGGTCGC GTGCTGGCCG GGCTCGCGCC GGACGAGAGC
GAAGTGCTCG GGCTCGTCGC GCTGATGGAA CTGCAGGCGT CGCGCATGCA TGCGCGCATC
GATGCGCAGG GCCGGCCCGT GCTGCTGCTC GACCAGGATC GCAGCCGCTG GGATCAACTG
CTGATCCGGC GCGGTCTCGC GGCGCTCGAA CGGGCGACGA AGCTCGGCGG CGTGCGCGGG
CCGTATGCGC TGCAGGCCGC GCTGGCTGCC TGCCACGCGC GTGCGCGGCA CGCGTCGGAA
ACGGACTGGG CGCAGATCGT CGCGCTGTAC GACGCGCTCG CCGAAGTCGC GCCGTCGCCG
GTCGTCGAAC TGAACCGCGC AGTGGCCGTC GGGATGGCGT TCGGGCCGGC CGCGGCACTC
GAACTCGTCG ATGCGCTGCG CGACGATCCC GCGCTCGCGC GTTATCACTG GCTGCCGAGC
GTGCGCGGCG ATCTGCTCGC GAAGCTCGGT CGCACCGACG AGGCGAAGCT CGAATTCCGC
CGCGCCGCGG AGTTGACCCG CAACGAGCGC GAGCGCGAAC TGCTGCTCAA GCGTGCGATG
GATGCATGA
|
|---|
| Protein sequence | MTREATHRAI EAVWRIEAPK IIARAARVVR DVGVAEELAQ DTLVAALEHW PVDGVPDNPA
AWLMTAVKRR ALDRVRQESL HAAKRDQLGH EMDALEAHVV PDIAEALADA SDDDIGDDLL
RLIFTSCHPV LSTDARVALT LRLLGGLTTG EIARAFLSPE PTIAQRIVRA KRTLAAARVP
FEVPAADARP ARLASVLEVI YLVFNEGHAA TAGDDWMRPA LCDEALRLGR VLAGLAPDES
EVLGLVALME LQASRMHARI DAQGRPVLLL DQDRSRWDQL LIRRGLAALE RATKLGGVRG
PYALQAALAA CHARARHASE TDWAQIVALY DALAEVAPSP VVELNRAVAV GMAFGPAAAL
ELVDALRDDP ALARYHWLPS VRGDLLAKLG RTDEAKLEFR RAAELTRNER ERELLLKRAM
DA
|
|---|
| |