| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3664 |
|---|
| Symbol | |
|---|
| ID | 6179327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 619840 |
|---|
| End bp | 621528 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641683434 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001810347 |
|---|
| Protein GI | 172062696 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.248385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.243257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCAAT TTGCGAAAAG CATAAAGTTC AGGATTTTTT CCACCCTTGC GGTGTGCGTC
GTGTTGATGG TCGCAATCGG CACATTCGGC GTATTCGGCT TGTCCAGACT GAATTCGAAT
CTCCATCGCG CCTATACGGG CAATACGGTG CCGATCGTCG AATTGACGGA AATCAGCGCG
CTTGCATTCA GCATACGACT GCAAATGCGC CGGATACAGG CCGAGCACGA CCCGGTGCGC
GCGCGCAGCG GGGTCGACGA CGTTCGCGTG CAACAAAGCC GTCTCGATAC GATCTGGAAC
CGTTATTACG AGAAATCGAT CACGAGCGAC AAGGAACGCA TCATCGCCGA GCGCATCCGG
GGCGTGCTGC CGCAGTTCCG GGCCGGGGTG AACGACGTGG TCACGGCGAT GGGCAGCGGG
GATCACGACG CGGCCAGTGC GGTGATCGAT CGACTGTCGC CGACCGCGAA CCTGCTCAGG
CAGGCGCTCC AGGAAGATAT CGCCCTGAAC GTCGAGCAAG CGAAATCGTT TGTCGACGAC
AGCGAATCGA CCTTCCGCAA CATTCTGTGG ATCGCGATCG GCCTGATCGG CGTCGGCGTG
CTGGTCGCGG CGTGGGCGTC CGCGCATCTG CTGCGGCACA TCTCGACGCC GCTAGGGAAG
GCCGTGCGCG TGGCCCACGA GATCGCGGGC GGCACGCTGG ACAACCGGAT CGACATCGAC
TCGCACGACG AATTCGGCCA GTTGCTCGGC GCGCTGGCGA CGATGGACCG GCAGCTCAGC
GCGACGGTGC GCGGCATCAA GCGCAGCGCG GAATCGGTTG CGATCGCGTC GCACCAGATC
GCGAGCGGCA ACGCCGATCT GTCAGCCCGG ACGGAGGAGC AGGCCGCGTC GCTCGAGGAA
ACCGCGTCGA GCATGACGCA ACTGACCGAG ACGGTGAAGC AGAACGCCGA CAACGCGCAG
CAGGCCAATA CGCTCGCGAC GCGCGCGACC GGGATGGCCG ATGCCGGCAA CGACGCGGTG
CAGCACATGG TCGCGACGAT CGAGCAGATC AGCGGCAGCT CCAGCCGGGT TTCCGACATC
ACGGGCGTCA TCGAGGGAAT TGCATTCCAG ACCAACATTC TCGCGCTCAA CGCGGCGGTG
GAAGCGGCGC GCGCGGGCGA GCAGGGGCGC GGTTTCGCGG TGGTCGCGAC CGAGGTGCGC
AACCTCGCGC AGCGCTCCGC GAGTGCCGCG AAGGAGATCA AGGAACTGAT CGGCACGTCC
GTGTCGATGA TCCATGACAG CGAGCAGCAG GCCGCGGACG TCGGCGCGAC GATGGGGCAG
GTGAAGCAGG CGATCAAGCA GGTGTCGGAT ATCGTCGCCG AAATCGCGGC GGCGTCTCGG
GAGCAGAGCC AGGGAATCGA GCAGGTCAAT GTGGCGATCG GGCAGATGGA GGGCGTGACG
CAGCAGAATG CGGCGCTCGT CGAGCAGGCG GCCGCGGCGT CTCATTCGCT CGAGGAGCAG
GCCGGGCATC TGCAGGCGGC GATGTCGGCG TTCAAGCTTG GGCCAATCGT CAGCGACGGG
CCAGCCGCGG CGGCGTCCGC GCTGGCGATT TCTCCGCCGG TGCGGGCGAA ACCGCCGGTG
GCGGCGCGGC TGCCGGACGC CCCGGATGCG CAGGCGCTGC GCAGGTCCGC CGAATGGCAC
GCTTTTTGA
|
|---|
| Protein sequence | MSQFAKSIKF RIFSTLAVCV VLMVAIGTFG VFGLSRLNSN LHRAYTGNTV PIVELTEISA
LAFSIRLQMR RIQAEHDPVR ARSGVDDVRV QQSRLDTIWN RYYEKSITSD KERIIAERIR
GVLPQFRAGV NDVVTAMGSG DHDAASAVID RLSPTANLLR QALQEDIALN VEQAKSFVDD
SESTFRNILW IAIGLIGVGV LVAAWASAHL LRHISTPLGK AVRVAHEIAG GTLDNRIDID
SHDEFGQLLG ALATMDRQLS ATVRGIKRSA ESVAIASHQI ASGNADLSAR TEEQAASLEE
TASSMTQLTE TVKQNADNAQ QANTLATRAT GMADAGNDAV QHMVATIEQI SGSSSRVSDI
TGVIEGIAFQ TNILALNAAV EAARAGEQGR GFAVVATEVR NLAQRSASAA KEIKELIGTS
VSMIHDSEQQ AADVGATMGQ VKQAIKQVSD IVAEIAAASR EQSQGIEQVN VAIGQMEGVT
QQNAALVEQA AAASHSLEEQ AGHLQAAMSA FKLGPIVSDG PAAAASALAI SPPVRAKPPV
AARLPDAPDA QALRRSAEWH AF
|
|---|
| |