Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3462 |
Symbol | |
ID | 6179272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 385349 |
End bp | 387352 |
Gene Length | 2004 bp |
Protein Length | 667 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641683231 |
Product | RNase II stability modulator |
Protein accession | YP_001810145 |
Protein GI | 172062494 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.347087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGACG AAAACGATAG CGCGGTGCTT GAAGCGCACG TCGGTACGCG CAGCCCCTGC TGGCGTCTCG GCAGCGACAG CAACGCGCTC GAGCTGGCGG CCGTCCGCGG CTTGACCAAC GTCGCGGTGG CGCTGACCGG CGAGCAGGCC GCGCGAATCC GCGCGCTCAC CGGCGTCACG TCGCACCTCG TGCTCGACCT CGCGCTGTTC GGCGACACGG TCAGTCTCCA TCTGGTTGGC CGCAAGGTCG ATACGTCCAA CTGGGCCGGC ACGGCGTCCG CGTATTCCGA TACCGCGTCG GTCGCGAACG ACCTCTCGCA CGGGCTCGCG TTCGCCGAGC AGGTCGTGTC CGAAGTGAAT TCGCTCGTCG TGATCCTCGA CCGCAACGGC ATGGTGCAGC GCTTCAATCG CCTGTGCGAG GAAGTGACGG GCAAGCGCGA GGTCGACGTG ATCGGCCGCA GCGCGTTCGA GCTGTTCATG AGCCCCGAGC AGGGCGCGCA GTCGCGCAGC AACATCACCG GCTTTTTCGC GAGCAACCGT TCCTTCGCGG TCGAGCGCTA CATCAACACG GTCAACGGGC CGCGCCTGTT CCAGTTCCGC AACAAGTTCG TGCAGAGCGG CAGCGGCGCC GACGAGCAGT ACCTGATCTG CTCGGGCATC GACGTCACCG AGGAGCGCAA CGCGCAGCAG CGGCTCACCG AACTCGCGAA CACCGACATG CTGACCGGCC TGCCGAACCG CCACGCGATC AGCGAGCGCA TCGGCGCGGC GCTGGCCGCG GACCGCGCCG ACATGCGCGG CCAGGTCGGC ATCCTGTTCC TCGATCTCGA CAACTTCAAG CGCGTCAACG ATCACTACGG GCACATCACC GGCGACCGCC TGCTGCAGGA CGTGTCCAAG ATCATCAGCG GCTGCCTGCC GTCCGGTGCG ACGCTCGCGC GGCTCGGCGG CGACGAATTC CTGGTGCTGT TCGAGCACGG CACGCGGCCG CTGCTCGAAG CGACCGCGCA GATCATCCTC GAACGGCTGC GCACGCCGAT CCACCTCGGG CTGATGGAGA TCTACACGAG CTGCTCGATC GGCATCGCGA TGTATCCGCA GCACGGCGAT TCGCTCGAAA CGCTGATCCG CAGCGCCGAC ACCGCGATGT ACGTCGCGAA GGAAGAAGGC AAGCATACGT ACCGCGTGTT CTCGCTCGAG ATGAACCAGA AGGTCGCGAA ATACATGTGG CTCGACACGA ACCTGCGCAA GGCGCTCGAG GAGGAGCAGT TCGTGCTGCA CTACCAGCCG GTCGTCGACC TCGCGAGCGG CGACGTGCGC AGCGTCGAGG CGCTGATCCG CTGGCAGTCG CCCGATCGCG GGCTCGTCGC GCCGATCGAG TTCATCCACT TCGCCGAGGA GTCGGGGCTG ATCGCGCCGC TCGGACGCTG GGTGATGCGC ACCGCGGCTG CGCAGGCCGC CGCATGGAAG GCGAAGGGGC TCGACGTGCG GATCGCGGTG AACGTGTCCG CGCGGCAACT GCAGGACATG AACATCGTCC ATCAGTTCGC ATCGATTCTC GCCAGCGCGG GGCTGAAGCC GAGCCTCGTC GACATCGAGC TCACCGAAAG CAGCTTCATC GAGGATGAGG AAACGGCGCA CGAGCTGATG AAGGAATTCC GCCAGCTCGG CGCGAAGATT CACCTCGACG ATTTCGGCAC CGGCTATTCG TCGCTGTCGC AACTGTCGCG GCTGCCGCTC GATTCGATCA AGCTCGATCG CAGCTTCATC ACGGGCATCG ATCGCAATCC GCGCTCGCAG GCGCTGGTGC GCTCGGTCGT GTCGCTCGCG AAGGCGCTGA GTTTCGCGGT AGTCGCCGAA GGCGTCGAGA CGCCCGGGGA GGCGGAATTC CTGAAGCAGG TCGACGTCGA CCACGCGCAG GGTTTCTACT TCGCGCGGCC GATGCCGGCC CAGGCGTTCG AGGGCTGGCT CGCGGAAACG AGAAAGCTCA GGCTGATCGC CTGA
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Protein sequence | MDDENDSAVL EAHVGTRSPC WRLGSDSNAL ELAAVRGLTN VAVALTGEQA ARIRALTGVT SHLVLDLALF GDTVSLHLVG RKVDTSNWAG TASAYSDTAS VANDLSHGLA FAEQVVSEVN SLVVILDRNG MVQRFNRLCE EVTGKREVDV IGRSAFELFM SPEQGAQSRS NITGFFASNR SFAVERYINT VNGPRLFQFR NKFVQSGSGA DEQYLICSGI DVTEERNAQQ RLTELANTDM LTGLPNRHAI SERIGAALAA DRADMRGQVG ILFLDLDNFK RVNDHYGHIT GDRLLQDVSK IISGCLPSGA TLARLGGDEF LVLFEHGTRP LLEATAQIIL ERLRTPIHLG LMEIYTSCSI GIAMYPQHGD SLETLIRSAD TAMYVAKEEG KHTYRVFSLE MNQKVAKYMW LDTNLRKALE EEQFVLHYQP VVDLASGDVR SVEALIRWQS PDRGLVAPIE FIHFAEESGL IAPLGRWVMR TAAAQAAAWK AKGLDVRIAV NVSARQLQDM NIVHQFASIL ASAGLKPSLV DIELTESSFI EDEETAHELM KEFRQLGAKI HLDDFGTGYS SLSQLSRLPL DSIKLDRSFI TGIDRNPRSQ ALVRSVVSLA KALSFAVVAE GVETPGEAEF LKQVDVDHAQ GFYFARPMPA QAFEGWLAET RKLRLIA
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