| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3460 |
|---|
| Symbol | |
|---|
| ID | 6179200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 379614 |
|---|
| End bp | 380918 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641683229 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001810143 |
|---|
| Protein GI | 172062492 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.42938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGCA AGATCCTCGC GGCGCCCGCC GCCGACCCCG CGGGCCCCGC GCGCAACGGC
CTGTTCGGAT GGTATGCGGA CGCGCAGCCG CGCGAGCGCC GCGCGTTCTG GAGCTGCAAG
GTCGGCTACA TGCTCGACGG GATGGACACG CAGATGCTGT CGTTCGTGAT CCCGACGCTC
GTCGCGACCT GGGGCATCTC GCTCGCGGAC GCCGGCTTCA TCGGCACGAT GACGCTGCTC
GCGTCGGCGC TCGGCGGCTG GCTCGCGGGC ATCCTGTCCG ACCGGATCGG CCGCGTGCGC
ACGCTGCAGC TGACCGTGCT GTGGTTCGCG GTGTTCACCG CATTGTGCGG ACTCGCGCAG
AACTATCACC AGCTGCTCGC GGCGCGCGCG CTGATGGGCT TCGGCTTCGG CGGCGAATGG
ACGGCCGGCG CGGTGCTGAT CGGCGAGGTG ATCCGCGCGC GCGATCGCGG CAAGGCGGTC
GGCCTCGTGC AGTCGGGCTG GGCGATCGGC TGGGGGCTGT CGGCGCTGCT GTATGCGCTG
CTGTTCTCGG TGCTGCCGGC CGAACAGGCA TGGCGCGCGC TGTTCCTCAT CGGCCTCGCG
CCGGCGCTGC TGGTGGTCGT GATCCGCCGC TACGTGAAGG AACCGGACGT CTACGAGAAG
GAAAAGGCCG CGCAGGCACA GGTGGCCGGC ACGCCGCGCC TCACGGAAAT CTTCGCGCCG
AAGCTGTTGT CGACGACGCT GCGCGCGGCG CTGCTGACGA CCGGCGCACA GGGTGGCTAC
TACGCGATCA CGACCTGGCT GCCGACGTTC CTGAAGACGG AGCGTCACCT GACCGTGATG
GGCACGGGCG GCTATCTCGC GATGATCATC ATCGGCTCGT GGGTCGGCTA CCTGACGAGC
GCCTACCTGA CCGACCGTCT CGGCCGCAAG CCGAACTTCA TCCTGTTCGC GCTCGGCTCG
ATGGTGATCG CGTTCGCCTA CACGTCGCCG GTGCTGAACC TCACGAACGC GTCGATGCTG
TGGCTCGGCT TCCCGCTGGG GTTCTTCGCG TCGGGCATCT TCTCCGGGAT GGGCGCGTTC
CTCACCGAGC TGTTCCCGAC GCGGGTGCGC GGCTCGGGGC AGGGCTTCTG CTACAACGTG
GGCCGCGCGG TCGGCGCGCT GTTCCCGTTC CTGATCGGCG CGCTGTCGAA GCACTACGGG
CTCGGCGCGA GCATCGGCAT CTTCGCGGTC GCCGCCTACG GCGTGATGAT CGTCGCCGCG
CTGACGCTGC CCGAAACCCG CGGCCGAGAA CTCGACGCCG CGTAA
|
|---|
| Protein sequence | MESKILAAPA ADPAGPARNG LFGWYADAQP RERRAFWSCK VGYMLDGMDT QMLSFVIPTL
VATWGISLAD AGFIGTMTLL ASALGGWLAG ILSDRIGRVR TLQLTVLWFA VFTALCGLAQ
NYHQLLAARA LMGFGFGGEW TAGAVLIGEV IRARDRGKAV GLVQSGWAIG WGLSALLYAL
LFSVLPAEQA WRALFLIGLA PALLVVVIRR YVKEPDVYEK EKAAQAQVAG TPRLTEIFAP
KLLSTTLRAA LLTTGAQGGY YAITTWLPTF LKTERHLTVM GTGGYLAMII IGSWVGYLTS
AYLTDRLGRK PNFILFALGS MVIAFAYTSP VLNLTNASML WLGFPLGFFA SGIFSGMGAF
LTELFPTRVR GSGQGFCYNV GRAVGALFPF LIGALSKHYG LGASIGIFAV AAYGVMIVAA
LTLPETRGRE LDAA
|
|---|
| |