Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3362 |
Symbol | |
ID | 6179170 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 273734 |
End bp | 274513 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641683131 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001810045 |
Protein GI | 172062394 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.947162 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATGCCA AGATTGACGG TCGCCTTGCC GGCAAGGTCG CCATCGTGAG CGGCGGCGCG GGCGGATGCG GCGCCGCCGC GTCCGAGCTG TTCGCCGCGC AGGGCGCGAA GGTGGCGATC ATCGACCGTG ATGGCGACGC GGCCGACACG CTCGCGTCGC GGTTGCGTGA TGCCGGCTTG CAGGCGATCG GCCTGCAAGC CGACGTGTCG AAGCAGCCGG ACGTGCAGAC CGCGGTCGAT GCGGCCCGTG CGCAGTACGG CAACGCGGAC ATCCTGTTCA ATCATGCGGG CACGCTGATC GTCAAACCGT TCCTCGATAT CGAGGAGTCG GAATGGGACT GGCTGATGGG CGTGAACGTG AAGAGCATGT TCCTGATGAC GAAGGCGGTG CTGCCGCAGA TGCTGGAAAA AGGACGCGGC AGCATCGTCT GTACGTCGTC GATCTCGGCC GTCTTCGCGA CGCCCGGCGA GGTGCTGTAT GACGCGACCA AGGGTGCGTG CCAGATGTTC GCGCGCGCGA TCGCCGTCGA ATACCGCGAT CGCGGCATCC GCTGCAACGC ATTGGCGCCG GGGTTCATCC GCACGCCGCA CGGCATGCGC GAGCTGAAGG ATCTGCAGGC GATGGGCGTG GACGCGACCG AGGCGGCCGT CGCGGTGCAG CAGGGCAGGC TGTGCGAGCC GTCGGAAGTG GCCGCGGCCG CGCTGTTCCT TGCGTCCGAC GAATCGAGCT TCGTCAACGG CACCCAGCTG TTCGTCGACA ACTGTTTTTC CGCCGTTTAG
|
Protein sequence | MNAKIDGRLA GKVAIVSGGA GGCGAAASEL FAAQGAKVAI IDRDGDAADT LASRLRDAGL QAIGLQADVS KQPDVQTAVD AARAQYGNAD ILFNHAGTLI VKPFLDIEES EWDWLMGVNV KSMFLMTKAV LPQMLEKGRG SIVCTSSISA VFATPGEVLY DATKGACQMF ARAIAVEYRD RGIRCNALAP GFIRTPHGMR ELKDLQAMGV DATEAAVAVQ QGRLCEPSEV AAAALFLASD ESSFVNGTQL FVDNCFSAV
|
| |