Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3084 |
Symbol | |
ID | 6178010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 3425363 |
End bp | 3426280 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641682861 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001809775 |
Protein GI | 172062123 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.115544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0198492 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTTCGATC AGCTGAAGGC GTTCCACGCG ACCGTCAGGC AGGGCAGCAT CACGCGCGCC GCGCGCCATC TGGGCGTGAG CCAGCCGACG ATCGCCGCGC AGATCCGGCA GGTCGAGCAG TGGTACGGCG TCGAGCTGTT CTACCGCAGC GGCCGCAAGC TCGAGGTCAC CGAGACCGGC ATCGAGCTGC TGCCGCTCGT CGAGAAGATG ATCGCGCTCG AGGCGCAGGC CGACATCATG CTGCGCAACG TCGGCGGCCT GTTCGAAGGC CATCTGCGGA TCGGCGCGAC GGGGCCGTAC TACATCATGG ACGCGGTCGG CCGCTTCTCG CATGCGCATC CGTCGATCGC GCTCACGTGC CGGATCGGCA ATTCCGAGGA GATCCTGCAG GCGCTGCAGG AATTTCGCAT CGATCTCGCG GTGTCATCGC AGCGCAATGA CGCGGACGGC CTCGAACGCA AGGTGATCTC CACCGATCCG CTCGTGCTCG TCGTGCATCG CGATCACCCG CTCGCGCGCT TCGACGCGAT CGACGCCGCG CAGCTCGCCG ACGTGCGGCT GCTGATCCGC GAGGAAGGGT CGGTCACGCG CCGCTGCACG GAGACGATCC TCGCGGCGGC CGGCGTCGCG GCCACGTCGG TCGCCGAGAT CGGCAGCCGT GAAGCGATCC GCGAGGCGAT CCTGCATGGC GTGGGCGGGA GCCTGTTTCC ACGCGGCGAG GCCGAGCGCC ATCCGGACCT GCGCGTCGTC GCGCTGCGAG GCGTCGACAC AACGATCGAC GAATACGTGT ACTACCTGAA GGCGCGCCGC CAGAGCCCCG CGATCGATGC GTTCCTCGCG TGCATCCTGC GTGCGCAGCC GGCCACGCAC GACGCGGCAA GCGCGGCACG CACGGCGCGG CCGGTGAACG CACGCTGA
|
Protein sequence | MFDQLKAFHA TVRQGSITRA ARHLGVSQPT IAAQIRQVEQ WYGVELFYRS GRKLEVTETG IELLPLVEKM IALEAQADIM LRNVGGLFEG HLRIGATGPY YIMDAVGRFS HAHPSIALTC RIGNSEEILQ ALQEFRIDLA VSSQRNDADG LERKVISTDP LVLVVHRDHP LARFDAIDAA QLADVRLLIR EEGSVTRRCT ETILAAAGVA ATSVAEIGSR EAIREAILHG VGGSLFPRGE AERHPDLRVV ALRGVDTTID EYVYYLKARR QSPAIDAFLA CILRAQPATH DAASAARTAR PVNAR
|
| |