Gene BamMC406_3019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3019 
Symbol 
ID6179032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp3344989 
End bp3348135 
Gene Length3147 bp 
Protein Length1048 aa 
Translation table11 
GC content67% 
IMG OID641682795 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_001809711 
Protein GI172062059 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria
[COG5373] Predicted membrane protein 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.103132 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATCA ATTCTTCGGA AGGACTGGTC AATCAGGAGC GCACGGTGGT GATTCGCAGC 
GATGCGATGC CACGGCTGCT TGGCAAGCCC GCGCTTCGGT TCTTGTCGCT TCGCGGTGGA
GAACACCTCG GGAAACTTTA CACGTACGAG TTGCTGCTGC GCACGCCGGA TGATTTTCAC
GTGCCGTTGT CGACCAGTGC GAATCTCGAC TTGAAGGCGA TGATCGGCAC GGAGATGACC
GTCAGTGTTC AACTGGAGGG CATCGGAACA GGCGTGGAAG GCGGCGTCGG CGCCGGCGGC
CGGGAAATCA GCGGCCTCGT CGTGAAGGCC GGTTTCCTGC GCACGGAAGG GCGCTACAAC
GTTTATCGGA TCGTGTTGCG GCCCTGGCTT TGGCTCGCGA CGCTGACGAG CGACTACAAG
ATCTTTCAGG ACAAGACGGT GGTCGAGATC ATCGACACCG TGCTGAGCGA TTATCCGTAT
CCGGTCGACA AGCGCCTCGA CGTCGACAAG TACACGGTGC AGGGCGAGAG CACGCGCAAT
GAGCCGCGGG CGTTCCAGGT GCAATACGGC GAAACGGATT TCGATTTTAT CCAGCGCCTG
ATGGAGGAGT GGGGGATCTA CTGGTTCTTC GAGCACTCCG ACGGCAAGCA TCGGCTCGTG
CTGTGCGATC ACATCGGCGC GCATCGCCGC TCGCCGAGTG CCGCCTATCA CGAAATTAGG
CATCACCCGG AAGGCGGCAA GATCGACATC GAGTATCTGA ACTATTTCTC GACGGACGAA
TCGCTGCGGC CGGGGCGGGT GGTGGTCGAC GATTTCGACT TCACGCGGCC GAGGGCGCTG
CTCGTGACGT CGAACCATCA GCCGCGAGAA ACGAATTGGG GCGAAGGTGA GTTGTTCGAG
TGGCCGGGCG ACTACACCGA CAGCAAGCAT GGCGACCTGA TCAGCCGGGT CCGGATGGAG
GAACGGCGTG CGCCCGGCAC GCGTGCGTTC GGCAAGGGAA ACGTGCGAGG TCTTGCGTGC
GGCCAAACCT TTACGCTGAC GAAACATAAG CACAAGGAAG CCAACCGCGA GTACTTGATC
ATCGAAGCGG CGTTGATGCT GACCGAGATC GCCGACGAAT CTGGTAGCGG TTACCGGTAC
GAATGCAATA ACGAGCTGAT CGTACAGCCG ACGAGCGAAG TGTTCCGGAT GCCGCGCGAG
ACGCCGAAGC CGACCACGAG TGGTCCGCAA TCGGCGATTG TCGTGGGTCC GCCCGGACAC
GAGGTGTGGA CGGACGAGTT CGGCCGCGTG AAGGTGCGCT TCCTGTGGGA CCGATATGCA
CGCAACGATG CGACGGATTC GTGCTGGGTC CGTGTCAGCC AGGCATGGGC AGGCGTGAAT
TTCGGTGGCA TCTATATTCC ACGAATCGGG CAGGAAGTGA TCGTCGGCTT CATGAATGGC
GATCCGGATC GTCCGTTGAT TCTCGGCAGC CTGTACAACA CCGTGACGCC GCCACCGTGG
GATCTGCCTG CGGAAGCCAC GAAAAGCGGC TTCAAGAGCA AGACGATCAC GGGCGGCCGC
GAAAACTACA GCGGCATCCG GTTCGAAGAC AAGAAGGGTT CCGAGGAATT CCACATGCAG
GCGGAGCGGG ACATGAACCG CCTGACGAAG AACAACGAAT CGCACACCGT CGGTGTGAAT
CTGTCGATGG GCGTGGGGCT CACGCACACG CGTGCGGTGG GCGGCATGTT CAGCAGTATC
GTGGGCGGCG TCGCCAGCTA CGCGGTGGGC GGCGCCGAGT CGACGATGAT CGGCGGTGCG
TGCGCGTTGA ACGTCGGCGG TGCGTATGCG ATTGCGGTGG GCGGTGCAAT GTCGACGTCG
GTGGGCGGTG CTTATGCGCT GAACGTCGGT GGCGCGCTTT CCATCGTGTG TGGTGCATCG
GCCATCAACA TGACGGCCGA CGGCACGATC AAGCTGGTCG GCACGAAGAT CCGAATCGTC
GGCAGTGACG AGGTCGTGGT TCAGGGTTCG CCGCTGCAGT TGAATCCTGG ATGCGGCGAC
GGCGGTGCGG GTGGAGGGGG CGGGGGTGGG GCGATTCCGC CGATTCCGTT CCCGACTTTC
ATGTTTAGGA TGACCAAGCC GACGTTGCCG CCGCCGCCGC CGCCGCCGAC AGTTGTTCCG
CCGCCGCCGC CGCCGCCGAG CGTTGAGCCG CCGCCGCCAA GCGAGATGCC GCCGCCGAGC
GAGATGCCGC CGCCGAGCGA GATGCCGCCG CCGAGCGAAA TGCCGCCGCC GAGCGAAATG
CCGCCGCCGA GCGAAATGCC GCCGCCGAGC GAAATGCCGC CGCCGAGCGA AATGCCGCCG
CCGAGCGAGA CGCCGCCGCC GAGCGAAATG CCGCCGCCGA GCGAAATGCC GCCGCCGAGC
GAAATGCCGC CGCCGAGCGA AATGCCGCCG CCGAGCGAAA TGCCGCCGCC GAGCGAAATG
CCGCCGCCAA GCGAGACGCC GCCGCCGAGC GAAACGCCGC CGCCAAGCGA GACGCCGCCG
CCAAGCGAAA CGCCGCCGCC GAGCGAGACG CCGCCGCCAA GCGAAACGCC GCCGCCAAGC
GAAACGCCGC CGCCGAGCGA AACGCCGCCG CCGAGCGAAA CGCCGCCGCC AAGCGAGACG
CCGCCGCCGA GCGAGACGCC GCCGCCAAGC GAGACGCCGC CGCCAAGCGA GACGCCGCCG
CCAAGCGAGA CGCCGCCGCC AAGCGAGACG CCGCCGCCGA GCGAAACGCC GCCGCCGAGC
GAGACGCCGC CGCCAAGCGA GACGCCGCCG CCAAGCGAGA CGCCGCCGCC GAGCGAGACG
CCGCCGCCAA GCGAAACGCC GCCGCCAAGC GAGACGCCGC CGCCGAGCGA AACGCCGCCG
CCGAGCGAAA CGCCGCCGCC GAGCGAGACG CCGCCGCCGA GCGAAACGCC GCCGCCGAGC
GAGACGCCGC CGCCGAGCGA AACGCCGCCG CCGAGCGAGA CGCCGCCGCC GAGCGAGACG
CCGCCGCCGA GCGAGACGCC GCCGCCGAGC GAGACGCCGC CGCCGAGCGA GACGCCGCCG
CCGAGCGAGA CGCCGCCGCC GAGCGAGACG CCGCCGCCGA GCGAAACGCC GCCGCCGAGC
GAAGAGCCAC CGGAATCGGA ATTTTGA
 
Protein sequence
MSINSSEGLV NQERTVVIRS DAMPRLLGKP ALRFLSLRGG EHLGKLYTYE LLLRTPDDFH 
VPLSTSANLD LKAMIGTEMT VSVQLEGIGT GVEGGVGAGG REISGLVVKA GFLRTEGRYN
VYRIVLRPWL WLATLTSDYK IFQDKTVVEI IDTVLSDYPY PVDKRLDVDK YTVQGESTRN
EPRAFQVQYG ETDFDFIQRL MEEWGIYWFF EHSDGKHRLV LCDHIGAHRR SPSAAYHEIR
HHPEGGKIDI EYLNYFSTDE SLRPGRVVVD DFDFTRPRAL LVTSNHQPRE TNWGEGELFE
WPGDYTDSKH GDLISRVRME ERRAPGTRAF GKGNVRGLAC GQTFTLTKHK HKEANREYLI
IEAALMLTEI ADESGSGYRY ECNNELIVQP TSEVFRMPRE TPKPTTSGPQ SAIVVGPPGH
EVWTDEFGRV KVRFLWDRYA RNDATDSCWV RVSQAWAGVN FGGIYIPRIG QEVIVGFMNG
DPDRPLILGS LYNTVTPPPW DLPAEATKSG FKSKTITGGR ENYSGIRFED KKGSEEFHMQ
AERDMNRLTK NNESHTVGVN LSMGVGLTHT RAVGGMFSSI VGGVASYAVG GAESTMIGGA
CALNVGGAYA IAVGGAMSTS VGGAYALNVG GALSIVCGAS AINMTADGTI KLVGTKIRIV
GSDEVVVQGS PLQLNPGCGD GGAGGGGGGG AIPPIPFPTF MFRMTKPTLP PPPPPPTVVP
PPPPPPSVEP PPPSEMPPPS EMPPPSEMPP PSEMPPPSEM PPPSEMPPPS EMPPPSEMPP
PSETPPPSEM PPPSEMPPPS EMPPPSEMPP PSEMPPPSEM PPPSETPPPS ETPPPSETPP
PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP
PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP
PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP
PSETPPPSET PPPSETPPPS EEPPESEF