Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3019 |
Symbol | |
ID | 6179032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 3344989 |
End bp | 3348135 |
Gene Length | 3147 bp |
Protein Length | 1048 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641682795 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001809711 |
Protein GI | 172062059 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG5373] Predicted membrane protein |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.103132 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAATCA ATTCTTCGGA AGGACTGGTC AATCAGGAGC GCACGGTGGT GATTCGCAGC GATGCGATGC CACGGCTGCT TGGCAAGCCC GCGCTTCGGT TCTTGTCGCT TCGCGGTGGA GAACACCTCG GGAAACTTTA CACGTACGAG TTGCTGCTGC GCACGCCGGA TGATTTTCAC GTGCCGTTGT CGACCAGTGC GAATCTCGAC TTGAAGGCGA TGATCGGCAC GGAGATGACC GTCAGTGTTC AACTGGAGGG CATCGGAACA GGCGTGGAAG GCGGCGTCGG CGCCGGCGGC CGGGAAATCA GCGGCCTCGT CGTGAAGGCC GGTTTCCTGC GCACGGAAGG GCGCTACAAC GTTTATCGGA TCGTGTTGCG GCCCTGGCTT TGGCTCGCGA CGCTGACGAG CGACTACAAG ATCTTTCAGG ACAAGACGGT GGTCGAGATC ATCGACACCG TGCTGAGCGA TTATCCGTAT CCGGTCGACA AGCGCCTCGA CGTCGACAAG TACACGGTGC AGGGCGAGAG CACGCGCAAT GAGCCGCGGG CGTTCCAGGT GCAATACGGC GAAACGGATT TCGATTTTAT CCAGCGCCTG ATGGAGGAGT GGGGGATCTA CTGGTTCTTC GAGCACTCCG ACGGCAAGCA TCGGCTCGTG CTGTGCGATC ACATCGGCGC GCATCGCCGC TCGCCGAGTG CCGCCTATCA CGAAATTAGG CATCACCCGG AAGGCGGCAA GATCGACATC GAGTATCTGA ACTATTTCTC GACGGACGAA TCGCTGCGGC CGGGGCGGGT GGTGGTCGAC GATTTCGACT TCACGCGGCC GAGGGCGCTG CTCGTGACGT CGAACCATCA GCCGCGAGAA ACGAATTGGG GCGAAGGTGA GTTGTTCGAG TGGCCGGGCG ACTACACCGA CAGCAAGCAT GGCGACCTGA TCAGCCGGGT CCGGATGGAG GAACGGCGTG CGCCCGGCAC GCGTGCGTTC GGCAAGGGAA ACGTGCGAGG TCTTGCGTGC GGCCAAACCT TTACGCTGAC GAAACATAAG CACAAGGAAG CCAACCGCGA GTACTTGATC ATCGAAGCGG CGTTGATGCT GACCGAGATC GCCGACGAAT CTGGTAGCGG TTACCGGTAC GAATGCAATA ACGAGCTGAT CGTACAGCCG ACGAGCGAAG TGTTCCGGAT GCCGCGCGAG ACGCCGAAGC CGACCACGAG TGGTCCGCAA TCGGCGATTG TCGTGGGTCC GCCCGGACAC GAGGTGTGGA CGGACGAGTT CGGCCGCGTG AAGGTGCGCT TCCTGTGGGA CCGATATGCA CGCAACGATG CGACGGATTC GTGCTGGGTC CGTGTCAGCC AGGCATGGGC AGGCGTGAAT TTCGGTGGCA TCTATATTCC ACGAATCGGG CAGGAAGTGA TCGTCGGCTT CATGAATGGC GATCCGGATC GTCCGTTGAT TCTCGGCAGC CTGTACAACA CCGTGACGCC GCCACCGTGG GATCTGCCTG CGGAAGCCAC GAAAAGCGGC TTCAAGAGCA AGACGATCAC GGGCGGCCGC GAAAACTACA GCGGCATCCG GTTCGAAGAC AAGAAGGGTT CCGAGGAATT CCACATGCAG GCGGAGCGGG ACATGAACCG CCTGACGAAG AACAACGAAT CGCACACCGT CGGTGTGAAT CTGTCGATGG GCGTGGGGCT CACGCACACG CGTGCGGTGG GCGGCATGTT CAGCAGTATC GTGGGCGGCG TCGCCAGCTA CGCGGTGGGC GGCGCCGAGT CGACGATGAT CGGCGGTGCG TGCGCGTTGA ACGTCGGCGG TGCGTATGCG ATTGCGGTGG GCGGTGCAAT GTCGACGTCG GTGGGCGGTG CTTATGCGCT GAACGTCGGT GGCGCGCTTT CCATCGTGTG TGGTGCATCG GCCATCAACA TGACGGCCGA CGGCACGATC AAGCTGGTCG GCACGAAGAT CCGAATCGTC GGCAGTGACG AGGTCGTGGT TCAGGGTTCG CCGCTGCAGT TGAATCCTGG ATGCGGCGAC GGCGGTGCGG GTGGAGGGGG CGGGGGTGGG GCGATTCCGC CGATTCCGTT CCCGACTTTC ATGTTTAGGA TGACCAAGCC GACGTTGCCG CCGCCGCCGC CGCCGCCGAC AGTTGTTCCG CCGCCGCCGC CGCCGCCGAG CGTTGAGCCG CCGCCGCCAA GCGAGATGCC GCCGCCGAGC GAGATGCCGC CGCCGAGCGA GATGCCGCCG CCGAGCGAAA TGCCGCCGCC GAGCGAAATG CCGCCGCCGA GCGAAATGCC GCCGCCGAGC GAAATGCCGC CGCCGAGCGA AATGCCGCCG CCGAGCGAGA CGCCGCCGCC GAGCGAAATG CCGCCGCCGA GCGAAATGCC GCCGCCGAGC GAAATGCCGC CGCCGAGCGA AATGCCGCCG CCGAGCGAAA TGCCGCCGCC GAGCGAAATG CCGCCGCCAA GCGAGACGCC GCCGCCGAGC GAAACGCCGC CGCCAAGCGA GACGCCGCCG CCAAGCGAAA CGCCGCCGCC GAGCGAGACG CCGCCGCCAA GCGAAACGCC GCCGCCAAGC GAAACGCCGC CGCCGAGCGA AACGCCGCCG CCGAGCGAAA CGCCGCCGCC AAGCGAGACG CCGCCGCCGA GCGAGACGCC GCCGCCAAGC GAGACGCCGC CGCCAAGCGA GACGCCGCCG CCAAGCGAGA CGCCGCCGCC AAGCGAGACG CCGCCGCCGA GCGAAACGCC GCCGCCGAGC GAGACGCCGC CGCCAAGCGA GACGCCGCCG CCAAGCGAGA CGCCGCCGCC GAGCGAGACG CCGCCGCCAA GCGAAACGCC GCCGCCAAGC GAGACGCCGC CGCCGAGCGA AACGCCGCCG CCGAGCGAAA CGCCGCCGCC GAGCGAGACG CCGCCGCCGA GCGAAACGCC GCCGCCGAGC GAGACGCCGC CGCCGAGCGA AACGCCGCCG CCGAGCGAGA CGCCGCCGCC GAGCGAGACG CCGCCGCCGA GCGAGACGCC GCCGCCGAGC GAGACGCCGC CGCCGAGCGA GACGCCGCCG CCGAGCGAGA CGCCGCCGCC GAGCGAGACG CCGCCGCCGA GCGAAACGCC GCCGCCGAGC GAAGAGCCAC CGGAATCGGA ATTTTGA
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Protein sequence | MSINSSEGLV NQERTVVIRS DAMPRLLGKP ALRFLSLRGG EHLGKLYTYE LLLRTPDDFH VPLSTSANLD LKAMIGTEMT VSVQLEGIGT GVEGGVGAGG REISGLVVKA GFLRTEGRYN VYRIVLRPWL WLATLTSDYK IFQDKTVVEI IDTVLSDYPY PVDKRLDVDK YTVQGESTRN EPRAFQVQYG ETDFDFIQRL MEEWGIYWFF EHSDGKHRLV LCDHIGAHRR SPSAAYHEIR HHPEGGKIDI EYLNYFSTDE SLRPGRVVVD DFDFTRPRAL LVTSNHQPRE TNWGEGELFE WPGDYTDSKH GDLISRVRME ERRAPGTRAF GKGNVRGLAC GQTFTLTKHK HKEANREYLI IEAALMLTEI ADESGSGYRY ECNNELIVQP TSEVFRMPRE TPKPTTSGPQ SAIVVGPPGH EVWTDEFGRV KVRFLWDRYA RNDATDSCWV RVSQAWAGVN FGGIYIPRIG QEVIVGFMNG DPDRPLILGS LYNTVTPPPW DLPAEATKSG FKSKTITGGR ENYSGIRFED KKGSEEFHMQ AERDMNRLTK NNESHTVGVN LSMGVGLTHT RAVGGMFSSI VGGVASYAVG GAESTMIGGA CALNVGGAYA IAVGGAMSTS VGGAYALNVG GALSIVCGAS AINMTADGTI KLVGTKIRIV GSDEVVVQGS PLQLNPGCGD GGAGGGGGGG AIPPIPFPTF MFRMTKPTLP PPPPPPTVVP PPPPPPSVEP PPPSEMPPPS EMPPPSEMPP PSEMPPPSEM PPPSEMPPPS EMPPPSEMPP PSETPPPSEM PPPSEMPPPS EMPPPSEMPP PSEMPPPSEM PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS ETPPPSETPP PSETPPPSET PPPSETPPPS EEPPESEF
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