Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2709 |
Symbol | |
ID | 6178906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 3007376 |
End bp | 3008881 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641682485 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001809402 |
Protein GI | 172061750 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0191424 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCA GCCTTCAACT CCGCCTGTCG CAACACCTGG CGCTGACCCC GCAACTGCAG CAGTCGATCC GGCTCCTGCA ACTGTCGACG CTCGAACTGC AGCAGGAAGT CGCGATGGCC GTCGCGCAAA ATCCGTTGCT CGAAAACGAA GACGAATGGA TCACGAGTCC GCTGCGTGTC GCGTCGGACG GATCGCTGAT CGCACAGGGG CCTTCCGGAC AGAACATCGA GCCGGGCCCC GCGAGCGGCA GCAGCCCGTC GAGCGAGCGC GCCGAGCGCG ACGAGCCGGC CGGCGCCGAC GAATACGACG GCTACGGGTC CGGCGAGGCC GGCGACGGCC CGCAGTGGAA TCTTGACGAG TACGGCCGCT CGAGCGGCGC GTCGGACGAT GACGACCTCC CGCCGCTGCA GGTGCAGGAA GCCGCGACGT CGCTGCGCGA CCACCTGTCC GCGCAGTTGC GCATGACGCA GGCCAGCCCG CGCGATCGCG CACTCGTGAT GTTCCTGATC GAATCGCTCG ACGACGACGG CTACCTGACC GCGTCGCTCG ACGAAGTGCT CTCCGACCTG CCGCCGGAAC TGGAAGTCGA CTGCGACGAA CTGAATGCGG CGCTCGCGCT GCTGCACAGC TTCGACCCGG CCGGGGTCGG GGCCCGCTCG GCCTCCGAAT GCCTGAAGCT GCAGTTGCTG CGCCTCGATC CGTCCCCCAC CCGCACGCTC GCACTGGAGA TCGTGTCGCA GCACCTCGAG CTGCTCGCGG CGCGCGACTT CACGCGGCTG CGCAAGCACC TGAAGGCGAG CGACGACGCG CTGCGCGACG CGCACGCGCT GATCCGCTCG CTGGAGCCGT TCCCAGGCGC CGCGTACGGC AAGGCCGAGG CCGACTACGT CGTGCCCGAC ATCATCGTGA AGAAGGCCGG CCAGGGCTGG CTCGCGGAAC TCAATCCTGA AGTGATGCCG CGCCTGCGGA TCAACAACCT GTACGCGAAC ATCCTGCGCA ACAGCCGCGG CGATCCGTCG GCCGGGTCGC TCAAGCAGCA GCTCCAGGAA GCACGCTGGC TGATCAAGAA CATTCAGCAG CGATTCGACA CGATCCTGCG TGTCGCGCAG GCCATTGTCG AACGTCAAAA GAATTTCTTC GCGCATGGTG AAATCGCCAT GCGCCCCTTG GTTTTGCGGG AAATAGCTGA TACGCTGGGC CTACACGAGT CGACTGTCAG CCGTGTGACA ACAGGCAAGT ACATGCTGAC CCCGTTCGGT ACGCTGGAAT TCAAGTACTT CTTCGGGTCA CACGTTTCGA CCGACACCGG AGGCGCCGCA TCGTCGACCG CCATCCGAGC CCTGATCAAG CAACTGATAG GAGCTGAAGA CCCAAAATCG CCACTTTCGG ACAGCCGCAT TGCCGAGCTG CTGGCAGAAC AGGGTTTCGT GGTTGCGCGC CGCACGGTTG CCAAGTATCG CGAAGCCCTC AAAATCCCGG CAGTGAATCT GCGCAAGTCT CTTTAG
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Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA VAQNPLLENE DEWITSPLRV ASDGSLIAQG PSGQNIEPGP ASGSSPSSER AERDEPAGAD EYDGYGSGEA GDGPQWNLDE YGRSSGASDD DDLPPLQVQE AATSLRDHLS AQLRMTQASP RDRALVMFLI ESLDDDGYLT ASLDEVLSDL PPELEVDCDE LNAALALLHS FDPAGVGARS ASECLKLQLL RLDPSPTRTL ALEIVSQHLE LLAARDFTRL RKHLKASDDA LRDAHALIRS LEPFPGAAYG KAEADYVVPD IIVKKAGQGW LAELNPEVMP RLRINNLYAN ILRNSRGDPS AGSLKQQLQE ARWLIKNIQQ RFDTILRVAQ AIVERQKNFF AHGEIAMRPL VLREIADTLG LHESTVSRVT TGKYMLTPFG TLEFKYFFGS HVSTDTGGAA SSTAIRALIK QLIGAEDPKS PLSDSRIAEL LAEQGFVVAR RTVAKYREAL KIPAVNLRKS L
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