| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2559 |
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| Symbol | |
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| ID | 6178880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2840602 |
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| End bp | 2843289 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641682334 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001809252 |
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| Protein GI | 172061600 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCGC AAATGTTAAG AAGCGCATTG CTGGCCGGAC CGGTTCAGCA CGAGCGCCTT
GTCAAACTGG ATACGCCGCT GGGCCCCGAC GTGCTGCTGC CGCATCGCGT CATCGGCCGA
TCGCGGCTCG GGCGTCACTT CGAGTTCACG GTCGATACCG TGTCGGTATC CGATAACCTC
GAGCTCAAGA AGCTGATCGC GCAGCCGGTC ACGCTGTGGA TCCTGCAGGC CGACCGGTCT
TATGCGCCTC ACCACGGCTA CGTGCATTGC GCCCGCCGGC TCGGCTCGGA CAGCGGCGTC
ACGCACTACC AGATCGCCTT CGCTTCGTTC CTGCACTTTC TCAAGTTCCG CCGCGACCAG
CGAATCTGGC AGGACCAGTC CGCGGACGAC ATCATTGCCG ACGTGCTGAA CCAGCATCCG
CAGGCCAAGG GTCGCTTCAC CTTCAAGCTC CACCAGCCGC TGCCGCTCCG TTCGTTCTGC
ATGCAGTACG AGGATGACTG GAATTTCGTG CATCGCCTGA TGGAATCGGA AGGCCTGTAT
GGCTTCTGGG AACAGGACCA GGACGGCAAG TCGCACCGGC TCGTCGTCGT CGACCGCGTC
GACGCGTTGC CCACGCTGTC GCCGCGAACG GTGCGCTTTC ATCATGCGGG CACGGGCGAC
GAGGCCGACA CCTTCGTCCA GTTTTCCGGC ACGCGCACGC TGCGAAGTGT CGCCCGCGCC
ACACGCACGT TCGACTACAA GCAGCCGCCG AGCGCGGCGA ACCCGAAGGC GACCCATACG
CCGACGATCG CCAATCAGGG CGACCTGCCG CCGCAGCTCG AGGTCTACGA ATACACCGGT
GCGTACACGT ATCCCGAACA GTCCCGCGGT GACCATCTGT CGAAGATATG GATGGAGGAA
CAGGAGTCAC GCGCGAAACG CTTTCATGGC GTCGGCGGCG TGCGGCGCAT GGATGCCGGG
CGGACCTTCG AGCTGGCGGA TCACCCCGAA CACGACAAGG ACGATGCCGG GCAGCGCGAA
TTCGCCGTGA TCGAGACGGC GTGGGTCATC GTCAACAACC TGCCCGTGGC GGACGAACAG
GCGGTTTTCC CGCACAGCCT GCAGGCCGAG GTCGGCAGCA TCGTGGAGGC AACCGATACG
GGCCAGTCGC GCGTGCGTCA TCCCGACGGC AGCGAAGGCT TCTTTCAGAT CCGCGTCGAA
GCCCAGCGCA CGACCGTACC GTTCCGCAGC CCGTTCGAGC ACGCGAAGCC GCCGATGCAC
CTGCAATCGG CGATCGTCGT CGCACCGAAA GGCGAGGAAA TCCACACCGA CGCGCTCAAC
CGGGTCAAGG TTCGCTTCCA TTGGGACCGC CTGAACGACG GCGACGAAAA GGCGTCGTGC
TGGCTGCGTG CCACCGCGTC GGATTCGGGC AAGGGTTATG GGGCCGTTCA CCCGCACCGC
AGCGGCGAGG AGGTGCTGGT CGATTTCCTC GGCGGCGACT GCGATCGCCC GATCATCGTC
GGCAAGCTAT ACAACGGCGC GACGAGCCCG CAGTGGCACA GCAACGGGAT CCTGTCCGGA
TACCGGTCGA AAGAATACGC GGGCGCCGGC TACAACCAGC TCGTGCTCGA CGACGCGACC
TCGCAGAACC GCGTGCACCT CTACAGCAGC CAGACCAATG CGCACCTGCA TCTCGGTTAC
CTGATCGACC ATACGGGCAA CAACCGCGGC AGCTATCTCG GCAGCGGCTT CGACCTGCGC
TCGGACGCGT ACGGCGCCGT GCGCGCGAAC CGCGGCCTGT ACGTCACGAC GCACCCGAAG
CAGCCGGCGA GCCAGCCGCT CGACGTTCAG GAAACGCAAC AGCAGCTCGT CCGTGCAGAA
GGCCTGATGG AGGCCATGTC GGAGGTCGGC GCGCAGCATC AGGCCGAACC GCTCGACCAC
GGCCACTCGG CGCTGAAGCA GTTCACCGAC GCGACGCAGA ACAGCGTGAG CGGCGGCACG
TCGGGCGGCA GGACCGCGGG TGGCGGAACC GGCACGGCCA ACGCGTTCAA GGAGCCGGTG
ATGCTGTTCG GCAGCCCGGC CGGTATCGGG ATGTCCACGC AACAGTCCGT GCAGCTTGCC
GCGGACCAGC ACGTCAACCT CGTCAGCGGG CAAAGCACGC ACGTGGCCGC CGGAAAGTCG
CTGATCGCGA GCGTCCTCGA CCGGATCAGC CTGTTCGCGC AGAACTCCGG GATCAAGCTG
TTCGCCGGCA AGGGCAAGGT CGAAGTGCAG GCGCACGCGG ACAACATCGA GCTGACGGCC
CAGAAGGCGC TGAAGCTGAT GGCGGTAACC GAGTCGATCG AAGGCGCCGC GGCGAAGGAA
ATCCTGCTGA CCTCCGGCGG CGCGTACATC CGCATCGCGA ACGGCAACAT CGAAGTGCAC
GCACCCGGCA AGATCGACAT CAAGGGGGCG CAGCACGCGT TCAGCGGCCC CACGCACCTG
TCGCAGACGA TGCCGACCCT GCCGAACTCG ACCGGCAACT ACGATCAGGC GTTCATCGCG
CACTGGGCCG GCACCGACAT TCCGGTAGCG AACACGCGAT ACCAGATGTT CTCGAACGGC
AAGCTGCTCA AGGAAGGCGT CACCAATGCG GCAGGTGAGA CGGGGCTCAC GCAGAGCCAC
GTGCCGCACG ACGTCGTCGT CAAGTTTCTA GGGAAATCGA ATGGCTGA
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| Protein sequence | MNSQMLRSAL LAGPVQHERL VKLDTPLGPD VLLPHRVIGR SRLGRHFEFT VDTVSVSDNL
ELKKLIAQPV TLWILQADRS YAPHHGYVHC ARRLGSDSGV THYQIAFASF LHFLKFRRDQ
RIWQDQSADD IIADVLNQHP QAKGRFTFKL HQPLPLRSFC MQYEDDWNFV HRLMESEGLY
GFWEQDQDGK SHRLVVVDRV DALPTLSPRT VRFHHAGTGD EADTFVQFSG TRTLRSVARA
TRTFDYKQPP SAANPKATHT PTIANQGDLP PQLEVYEYTG AYTYPEQSRG DHLSKIWMEE
QESRAKRFHG VGGVRRMDAG RTFELADHPE HDKDDAGQRE FAVIETAWVI VNNLPVADEQ
AVFPHSLQAE VGSIVEATDT GQSRVRHPDG SEGFFQIRVE AQRTTVPFRS PFEHAKPPMH
LQSAIVVAPK GEEIHTDALN RVKVRFHWDR LNDGDEKASC WLRATASDSG KGYGAVHPHR
SGEEVLVDFL GGDCDRPIIV GKLYNGATSP QWHSNGILSG YRSKEYAGAG YNQLVLDDAT
SQNRVHLYSS QTNAHLHLGY LIDHTGNNRG SYLGSGFDLR SDAYGAVRAN RGLYVTTHPK
QPASQPLDVQ ETQQQLVRAE GLMEAMSEVG AQHQAEPLDH GHSALKQFTD ATQNSVSGGT
SGGRTAGGGT GTANAFKEPV MLFGSPAGIG MSTQQSVQLA ADQHVNLVSG QSTHVAAGKS
LIASVLDRIS LFAQNSGIKL FAGKGKVEVQ AHADNIELTA QKALKLMAVT ESIEGAAAKE
ILLTSGGAYI RIANGNIEVH APGKIDIKGA QHAFSGPTHL SQTMPTLPNS TGNYDQAFIA
HWAGTDIPVA NTRYQMFSNG KLLKEGVTNA AGETGLTQSH VPHDVVVKFL GKSNG
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