Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2426 |
Symbol | |
ID | 6177333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2692714 |
End bp | 2694096 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641682202 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001809120 |
Protein GI | 172061468 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.610338 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000133571 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAGAGTC TGCAAAGCCG CCTGCTGTCG CGCCGGCTGG CCTCGGTGAT TCGCGATTTC CACCAGCCGG TGATGATCTG GCAGGCGGCG ATCCTCGGCG GCGCACTCTG TTTCGCCTGG CTGGCCGCGC GCTTCGTGCA CGGCCGGATC GATGCGCGCC GCACGGCGTC CGGACGAGCG CCCGGGGCGG GCTCGGATAG CCTGAAGCGC GCGCTGTTTC CGTTGTTCGG CGGCATTTTC GTCGGCGTCG CGCAGCTCGC GTTCGAGCCG TTCATGTCGA CGTCGCTGCT GTCGCTCGCG CTCGTGCCGC TGTTCGGCAT CGGGCTGATC TACGTGCTGT TCTTCTTCGC GCGGCGCGTG TTCGCGCGCG ACGGCCACAC GCATGCGTGG CTGTCGATCG TCGAGAAGAT CGTGTCGACC ATCGTGTGGG CCGCGATGGT GCTGACCGTG CTCGGCATCC AGCGCGACGT GCTCGGCTGG CTCGACAGCG TGCAGTTTCG CGTGGCCAAT GCGCATCTCA CGCTGCTGTC GGTGATCTCC GGCGCGCTGT GGGTGTGCGT GACGCTGATG GTCGCGATGT GGCTCGGCTC GGTGCTCGAG GATCGCCTCG CGCGCGCGAG CACGCTCGAC GCGAACCTGA AGGTCGTGCT GTCGCGGGTC GGCCGCGCGC TGCTGGTGTT CGCGGCGATC CTGATCGGGC TGTCGCTCGT CGGCATCGAC GTGACGGTGC TCGGCGTGTT CGGCGGTGCG TTGGGCGTCG GCCTCGGCTT CGGCCTGCAG AAGGTCGCCA GCAATTACGT GTCGGGCTTC ATCATCCTGC TCGATCGCTC GCTGCGGCTC GGCGACGCGA TCAGCGTCGG CGGCTTGCAG GGCGTCGTCA CGCAGATCCG CACGCGCTAT ACGGTCGTGC GTGGCCTCGA CGGCAACGAG ACGCTGATCC CGAACGAGAA GCTGATCACG GACGTCGTGC AGAATCAGTC GTCGTACCTG ACGCGCGGCT ACGCGAAGGT CGCCGTGCAG GTCGCCTATA CGAACGACGT CGAGCAGGCA CTGGCGGTGC TGGCAGAGGC CGCGAAGGGC GTGCCGCGCG TGCTCGCGGA GCCGGCGCCG GCCCCGTACC TGGTCGGCTT CGGCGCGGAC GGGATCGATC TGGAGCTCGG TTTCTGGATC GAGGATGCGG CCACGGGCAC GTCGGGCGTG CGTTCGGCCG TGAACCGCAA CATCTGGCGG CTGTTCGGCG AGCACGGGAT CTCGATCCCG TTCCCGCAGC GCGAAGTGCG CGTGGTCGGC CTGCCCGATG GTCTTGCGGC AACTGGCGTG GTGGCGAAGG GCTTGCCCGT GGCCGGCGTC GGGACGGTGG ACGGGCAGGC GTCGGCGGCC TAG
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Protein sequence | MESLQSRLLS RRLASVIRDF HQPVMIWQAA ILGGALCFAW LAARFVHGRI DARRTASGRA PGAGSDSLKR ALFPLFGGIF VGVAQLAFEP FMSTSLLSLA LVPLFGIGLI YVLFFFARRV FARDGHTHAW LSIVEKIVST IVWAAMVLTV LGIQRDVLGW LDSVQFRVAN AHLTLLSVIS GALWVCVTLM VAMWLGSVLE DRLARASTLD ANLKVVLSRV GRALLVFAAI LIGLSLVGID VTVLGVFGGA LGVGLGFGLQ KVASNYVSGF IILLDRSLRL GDAISVGGLQ GVVTQIRTRY TVVRGLDGNE TLIPNEKLIT DVVQNQSSYL TRGYAKVAVQ VAYTNDVEQA LAVLAEAAKG VPRVLAEPAP APYLVGFGAD GIDLELGFWI EDAATGTSGV RSAVNRNIWR LFGEHGISIP FPQREVRVVG LPDGLAATGV VAKGLPVAGV GTVDGQASAA
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