| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2333 |
|---|
| Symbol | |
|---|
| ID | 6178218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2595772 |
|---|
| End bp | 2597739 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641682107 |
|---|
| Product | bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase |
|---|
| Protein accession | YP_001809027 |
|---|
| Protein GI | 172061375 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase
[COG2959] Uncharacterized enzyme of heme biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.623737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCG GCGCGCGCGC GTTCACCGCC GTCCTGACGC GTCCGGACGG CCAGTCGGCC
GGACTCTCGG CCCAGCTGGC CGAGGCCGGC TGCGACGTGC TCGAATTCCC GTTGATCGAC
ATCGCGCCGG TCGACGATCC GGCGCCGCTC GACGCCGCGT TCGCGGCGCT TGGCGATTAC
GCGCTGGTGA TCTTCGTGTC GCCGAACGCG ATCGACCGCG CGCTCGCGCA GTACGGCGCG
ATCTGGCCGA ATGCGCTGCC GGTCGGCGTC GTCGGCCCGG GCAGCGTCGC GGCGCTCGAG
CGCCACGGGA TCGCCGCGCC CGCGCATCGC GTGATCGCGC CGCAGGCGCC CGCCGACGGC
GGTGTCCCGC ATTACGATTC GGAAAACCTG TTCGCGAGCA TCGAGGCCGC ATTCGGCGGC
GCGCAGGCAC TCGCCGGCAA GCGCGTGCTG ATCGTGCGCG GCGACGGCGG GCGCGAATGG
CTCGCCGAGC GGCTGCGCGA AGCCGGCGCG GACGTCACGC TGGTCGCCGC GTACCGGCGC
GTCGTGCCCG AGCCGCGCGT CGGCGCGTGG GAACGCGTGC ATGCGCTGCT TGCCGGCGCG
CCGCACGCGT GGCTCGTCAC GAGCTCGGAA GGGGTGCGCA ACCTGCACGA ACTCGCGCGC
ACGCACCTGA ACGACGCCGA GATCGAAGCG CTGAAGCATG CGCCGCTCGT GACGCCGCAC
CCGCGCATCG AGCAGACCGC CCGCGCACTG GGTTTTGATA GGATTACGCT GACCGGCGCG
GGCGATGAGC GCATCGTCCG CGCGTTTCGA ACGATGGCCG ACGAGGCCGT CCAACCGGCG
ACAGCCGCAC CGGTGACTAA ACGCATGACA GATACCAACG ATTCCAAAAG CGTCGCTTCC
CAGCCGGCCG CTGCATCCGC GCCGCCGTCC AGTCCCCCTT ATCTCGCGCA ATCGCCTGCG
CGCCGCGGCA GCAGCGCGGC GCTGTGGTTC GTCGTCGTCG TGCTCGGCTG CGCCGCGGGC
GTGGGCGCCT ACGCGCTGAA CCGCAAGGTC GACCGGCTCG ACGCGACGTT CGTCGCGCGC
CAGAAGGCGC TCGACGCGCA AACGGCCGAG ACCCGCATGA AGACCGAGCA GGCGCTCGCA
GGCACGCACC AGGTCGACAC GCAGCTCGCG CAGCTCGACG GCAAGCTCGC CGACGCGCAG
AGCGCACAGC AGGCGCTGCA GCAGCAGTAC CAGGACCTGT CGCGCAACCG CGACGCGTGG
ATGCTGGAAG AAGTCGACCA GATGCTGTCG AGCGCGAGCC AGCAGCTGCA GCTCACGGGC
AACACGCAGC TCGCGCTGAT CGCGCTGCAG AATGCCGACG CGCGCCTCGC GACGTCGCAG
AGCGCGCAGG CCGTCACGGT GCGCAAGGCG CTCGCGCAGG ACATCGAGAA GCTGAAGGCC
GCACCGTCGG CCGACCTCAC GGGCCTCGCG ATCAAGCTCG ACGACGCGAT CGCGAAAATC
GACGCGCTGC CGCTGTCGGG CGAGGCGATC GTCCCGCACG CGGCGCCGAA GGCTGCGCCG
GCCGAGGCCG CCTCGTCGGT CGCGGCCGAC ACCCCGCGCT GGAAGGTGTG GTGGCATGAC
TTCTCGGCGG GCCTCGGCGA GCAACTGAAG GGCCTCGTGC AGGTGCGCCG GATCGACAAT
GCGGACGCGA TGCTCGCGTC GCCCGACCAG GGCTACTTCG TGCGCGAGAA CGTGAAGCTG
CGCCTGCTCA CCGCGCGGCT GTCGCTGCTC GCGCGCAACG ACACCGCGAT GAAGGCCGAC
CTGCATGCGG CGCAGGCGTC GCTCGGCAAG TATTTCGACC AGGCCTCGAA GGACACGCAA
ACCGTCCAGG ATCTGCTCCG GCAGGTCGAC GGCGCATCGC TGACGGTCGC GGTGCCGAAC
CTGAACACGA GCCTGAACGC CGTTCAGCAG TTCAAGAGCC GGGGGTAA
|
|---|
| Protein sequence | MAGGARAFTA VLTRPDGQSA GLSAQLAEAG CDVLEFPLID IAPVDDPAPL DAAFAALGDY
ALVIFVSPNA IDRALAQYGA IWPNALPVGV VGPGSVAALE RHGIAAPAHR VIAPQAPADG
GVPHYDSENL FASIEAAFGG AQALAGKRVL IVRGDGGREW LAERLREAGA DVTLVAAYRR
VVPEPRVGAW ERVHALLAGA PHAWLVTSSE GVRNLHELAR THLNDAEIEA LKHAPLVTPH
PRIEQTARAL GFDRITLTGA GDERIVRAFR TMADEAVQPA TAAPVTKRMT DTNDSKSVAS
QPAAASAPPS SPPYLAQSPA RRGSSAALWF VVVVLGCAAG VGAYALNRKV DRLDATFVAR
QKALDAQTAE TRMKTEQALA GTHQVDTQLA QLDGKLADAQ SAQQALQQQY QDLSRNRDAW
MLEEVDQMLS SASQQLQLTG NTQLALIALQ NADARLATSQ SAQAVTVRKA LAQDIEKLKA
APSADLTGLA IKLDDAIAKI DALPLSGEAI VPHAAPKAAP AEAASSVAAD TPRWKVWWHD
FSAGLGEQLK GLVQVRRIDN ADAMLASPDQ GYFVRENVKL RLLTARLSLL ARNDTAMKAD
LHAAQASLGK YFDQASKDTQ TVQDLLRQVD GASLTVAVPN LNTSLNAVQQ FKSRG
|
|---|
| |