Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2272 |
Symbol | |
ID | 6176050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 2529477 |
End bp | 2531816 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641682045 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001808967 |
Protein GI | 172061315 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTCCG CCCGGTCCAA CCACACGCCG CCGACCCGGC CGCTGCGCGC GCCGCGCAAA TCGCGCCGGC GTGCGCTGTT CGCGATCCCG TTGCTCGGGA TGCTGGCGCT TGCGCTGCTG TGGGCGGTGA TCATCGCGCG ACTGTCGGTC GAAAAGGACA GCGCGTACAA GGAAGCGGCG GCATCCGCGG CGATCCTGTC GTCCGCGCTC GAGCAGCACA CCGTCAAGGC GATCCACCAA GTCGACCAGA TCACCCGCTT CGTCAAGTTC GAGTTCGAGA AATCGCCCGC GCACTTCAAT CTCGCGAGCG CGGTCGAAAA AGGCGTCGTG CCGAGCGACA CGCTGATCCA GGTCTCGCTC GTGAACGCGA AGGGTATCCT GTTCGCGAAC ACGGCCGACA TCCATCCGCA GCCGATCAAC CTGTCGGATC GCGAGCACTT CAAGGTCCAT CTCGCGCACA ACGACGACCG CCTGTACATC AGCAAGCCGG TGTTCGGCCG CGTGTCGAGC CACTGGACGC TGCAGATGAC GCGGCGCCTG AACAACCCGG ACGGCAGCTT CGCGGGCATC GTCGTGGTGT CGGAAGACCC GAGCTACTTC ACCAACGACT TCTACAACAA CGCGGCAATC GGCAAGGAAG GCGTGATCTC CGTGGTGTCC GACACGGGCG CCGTGCTCGC GCGGCGCACC GGCTCGGTCA GCAACGCACC CGGTGCGTTC TCCGCATCGG GCGTGTACCC GATCGCCGAG CGCGTGACGG GCACGATCAT CGATCCGATC GACGGCGTGA CGCGCATCGT GTCGTACCGC CACCTCGACG GCTACCCGCT CGCGGTGATG GTCGGGCTGT CGCAGAGCGA GGAATTCGCG GACTACTCCC ACACGCGCAA CGTCTACCTG CTGATGACGA GCTTCATCAC GCTCGCGATG CTCGCGTTCT TCAGCGTCGC GACGGGGCTG ATCGGCAAGC TGCTGGGGCG CGAGCGCGAG ATGACCCAGC TCGCCGAATA CGACCTGCTC ACCGGCCTCG CGAACCGCTA CGCGACGCTG CGCGGGCTGC GCAACGACGT GTCGATGCCG GCCAGCCTGT CGCGGCTCGG CCTGCTGTTC ATCGACCTCG ACAACTTCAA GACCGTCAAC GACACGCTCG GCCACAACGC CGGCGACATC GTGCTGCAGA TGACCGCGTC GCGCCTGTCG GATGCAGTCG GCGACGAAGG CTCGCTCGCG CGGATCGGCG GCGACGAGTT CGTGGTCGTG ATGAAGGGCG ACGACATCGA ACGGCGCGCG GTGCGGCTCG CGGAGGCGAT CATCCGGATG TTCGGCGAGC CGTTCGACGT GCGCGGCAGT TCGTTCGTGC TGCACGCCAG CATCGGCATC GCGCTGCACA GCGTCGCGAA CGAAAGCGAG ATCGACCTGC TGAAGAAGGC CGACCTCGCG ATGTACAGCG CAAAGGACGC CGGCAAGAAC TGCTATCAGT TCTACGCGCC GCACCTGTCG CACCGCGCGG ACCACCTGAT GCGCTGGGAA CAGCAGTTGC GCGTCGCGCT CGCCGAAGGG CAGCTGTTCC TCGCCTACCA GCCGAAGATC GACCTGACGC ACCGCACGAT CACCGGCTTC GAGGCGCTCG CACGCTGGGA CCACCCCGAG CACGGGATCA TCTCCGCGAA CGAATTCATT TCGATCGCCG AATCGACGGG CCTGATCGTG CCGATCGGCG ACTTCGTGAT CCGCACCGCG TGCGAGCAGA TCGCGCGCTG GCGCGACGAC GGCCACGACA CGCTGACGCT CGCGATCAAC ATCTCGCCGG TGCAGTTCTG GCGCGGCGAC CTGATCGAGA CGATTTCCCA GGCGCTGCAG GACACCGGCA TCGACGCGAA CCGGCTCGAG ATCGAGATCA CCGAGACCGC GATGATGGAA TACCCGGAGC TCGTGTCCGA GAAGATCGTC GCGCTGAAGA AGCTCGGCAT CCGGATCGCG CTCGACGATT TCGGCACCGG CTATTCGTCG CTGTCGTACC TGCACCGCTT CTCCGTCGAC ACGCTGAAGG TCGACCGCTC GTTCGTGCAG GCCATCCCGA ACGATCGCAG CGTGTGCGTG ATGGTGTCGT CGATCGTGCA TCTCGCGCGC TCGCTCGGCC TGACGGTCGT CGTCGAGGGC ACCGAGACCG AGGAGCAGAT CGCGTGGCTG TCCGCGCTCG GCGAGATCGA GGCGCAGGGC TTCCTGTTCT CGCGCCCCGT GCCGGCCGAC GCGATTCCCG CGCTGATCGC ACGCTTCGGC GTGCGCGGCA CCCGGCCGGA CGTCCTCACG CACCGCGCGA CCGGCAGCAC CGGCGCCTGA
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Protein sequence | MSSARSNHTP PTRPLRAPRK SRRRALFAIP LLGMLALALL WAVIIARLSV EKDSAYKEAA ASAAILSSAL EQHTVKAIHQ VDQITRFVKF EFEKSPAHFN LASAVEKGVV PSDTLIQVSL VNAKGILFAN TADIHPQPIN LSDREHFKVH LAHNDDRLYI SKPVFGRVSS HWTLQMTRRL NNPDGSFAGI VVVSEDPSYF TNDFYNNAAI GKEGVISVVS DTGAVLARRT GSVSNAPGAF SASGVYPIAE RVTGTIIDPI DGVTRIVSYR HLDGYPLAVM VGLSQSEEFA DYSHTRNVYL LMTSFITLAM LAFFSVATGL IGKLLGRERE MTQLAEYDLL TGLANRYATL RGLRNDVSMP ASLSRLGLLF IDLDNFKTVN DTLGHNAGDI VLQMTASRLS DAVGDEGSLA RIGGDEFVVV MKGDDIERRA VRLAEAIIRM FGEPFDVRGS SFVLHASIGI ALHSVANESE IDLLKKADLA MYSAKDAGKN CYQFYAPHLS HRADHLMRWE QQLRVALAEG QLFLAYQPKI DLTHRTITGF EALARWDHPE HGIISANEFI SIAESTGLIV PIGDFVIRTA CEQIARWRDD GHDTLTLAIN ISPVQFWRGD LIETISQALQ DTGIDANRLE IEITETAMME YPELVSEKIV ALKKLGIRIA LDDFGTGYSS LSYLHRFSVD TLKVDRSFVQ AIPNDRSVCV MVSSIVHLAR SLGLTVVVEG TETEEQIAWL SALGEIEAQG FLFSRPVPAD AIPALIARFG VRGTRPDVLT HRATGSTGA
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