Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2226 |
Symbol | |
ID | 6178121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2476392 |
End bp | 2478173 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641681999 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_001808921 |
Protein GI | 172061269 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.472493 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGAAACCC AGAACACTCT TCGCAAACCG ATGGACGGCA CGGGCACGTC GCCGTTCACG GTTCTCAAGC GCCTGTGGCC GTACATCCGG CCGCTGATCG GCATCGTGGT GCTCGCCGTC GTCACGATGG GCGTCGTCGC GGCCACCGAA GCCGGGATTC CGGCGCTGCT CAAGCCGCTG CTCGACCATG GCTTCGGCTC GCACGGCAGC GACCGCGCGA AATGGTACGT GCCGATGGCC GTGATCGGCC TCGCGCTCGT ACGCGGCGTG TCGCAGTACG CGTCGAATTA CCTGCTCAAC TACGTATCGA ACCGCATCCT GCTGCAACTG CGGCTCGAAA TGTTCCAGCG GATGCTGCAC ACGGGCGCGT CGTTCTTCCA GCGCGAGACG GCGAGCACGG TGATCAACGC GATCGTGTTC GAGGTCAACC AGATCCTGGC GGTGCTGACC GGCGTGATGG TCACGCTCGT GCGCGACTCG CTGACCGTGA TGTTCCTGCT CGGCTACCTG TTCTACCTGA ACTGGCGGCT CACGCTGATC GTCGCGGTGA TCCTGCCGGG CATCGGCTGG CTCGTCAGCA AGATCAACCG CCGCCTGCGC CGCCTGAACC GCGAGCACCA GACGCTGACC AACGAGCTGT CGTACATCGT CGAGGAGACG GTCGGCGGCT ACAAGGTCGT CAAGGTGCAC AACGGCGAGA CGTACGAGAT GGACCGCTTC ACCGCGATGA GCAAGCGCCT GCGCGGCTAC GCGATGCGCA TGACGATCTC GGGCGGGCTC GCGCAACCGT TGACGCAGTT CCTCGCGTCG ATCGCGCTCG CGGTCGTGAT CACGATCGCG GTCGTGCAGT CGACCAACGA TCAGACGACG GTCGGCGGCT TCGTCGCGTT CGTCACGTCG ATGCTGCTAG TGATTTCGCC GCTCAAGCAC CTGATCGACG TGAACCAGCC GCTGCAGCGC GGGATGACGG CCGCCGAGCT GATCTTCGGG CTGATCGACG AGCCGGGCGA GCCGCAGGGC GGCGGCCGTG CGCTGCCGCA TGCGCGCGGC GAGATCGAGT TCCGCGGCGT GTCGTTCGAC TACGGCGCAT CCGAGCGGCC GACGCTCGAC CGCATTTCGT TCAAGGTCGC GCCGGGCGAA ATGATCGCGC TCGCGGGGCC GTCGGGCAGC GGCAAGACGA CCCTCGTGAA CCTGCTGCCG CGCTTCTTCG ATCCCACGGG CGGCGCGATC CTGGTCGACG GCGTGCCGGT GGCCGACTAC GACCTCCACG CGCTGCGCGG CCAGATGGCG ATGGTCAGCC AGGACGTCGT GCTGTTCAAC GACACGATCG CCGCGAACGT CGCGTACGGC CAGACGCCCG ATCGCGCACG CGTGCAGGCG GCACTCGAGG CGGCGAACCT GGCCGACGCG GTCGCCGCAA TGCCCGACGG GCTTGACACG CTGGTCGGCG GCAACGGGAT GCGGCTGTCG GGCGGCCAGC GGCAGCGGCT CGCGATCGCG CGCGCGATCT ACAAGGACGC ACCGATCCTG ATCCTCGACG AGGCGACCTC CGCGCTCGAT TCGGAATCCG AACGCCACGT GCAGGCCGCG CTCGAGCGGC TGATGGAAGG GCGCACGACG CTCGTGATCG CGCATCGGCT GTCGACGATC GAGCGTGCGG ACCGGATCCT CGTGCTCGAA GCCGGCAAGA TCGTTGAAGA GGGCAGCCAC GAAGAACTGT TGCGCCACGG CGGGCTGTAC GCGCACCTCC ACCGGATCCA GTACCAGCAG CAGGCGGCGT GA
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Protein sequence | METQNTLRKP MDGTGTSPFT VLKRLWPYIR PLIGIVVLAV VTMGVVAATE AGIPALLKPL LDHGFGSHGS DRAKWYVPMA VIGLALVRGV SQYASNYLLN YVSNRILLQL RLEMFQRMLH TGASFFQRET ASTVINAIVF EVNQILAVLT GVMVTLVRDS LTVMFLLGYL FYLNWRLTLI VAVILPGIGW LVSKINRRLR RLNREHQTLT NELSYIVEET VGGYKVVKVH NGETYEMDRF TAMSKRLRGY AMRMTISGGL AQPLTQFLAS IALAVVITIA VVQSTNDQTT VGGFVAFVTS MLLVISPLKH LIDVNQPLQR GMTAAELIFG LIDEPGEPQG GGRALPHARG EIEFRGVSFD YGASERPTLD RISFKVAPGE MIALAGPSGS GKTTLVNLLP RFFDPTGGAI LVDGVPVADY DLHALRGQMA MVSQDVVLFN DTIAANVAYG QTPDRARVQA ALEAANLADA VAAMPDGLDT LVGGNGMRLS GGQRQRLAIA RAIYKDAPIL ILDEATSALD SESERHVQAA LERLMEGRTT LVIAHRLSTI ERADRILVLE AGKIVEEGSH EELLRHGGLY AHLHRIQYQQ QAA
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