| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2065 |
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| Symbol | |
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| ID | 6176038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2305348 |
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| End bp | 2309559 |
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| Gene Length | 4212 bp |
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| Protein Length | 1403 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641681832 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001808762 |
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| Protein GI | 172061110 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAATG TACCTAAAAG TCCCGCGCCG ACGCGGGCCA AAGCGCCGTC GGCCAGGCAC
CCGGATGGTG CGGCCGATGC GCGCGAGCAG CAAGGCCAGT CGCCGCGCCA GCCGCAGCAA
CAGCAGGCGG GCAAGCCGCC GCGCGGGCCG CGCGGTGAAG AGCGGCGCGG CGACGCGCGC
CAGCCGGCCG CGGCGACGGA CGCAGCGCGG GCGGATGCGC GCCCCCCGCG CCGCGAGCGT
GCGCCGCGCG CGGCCGTCGC CCCCAATCCG GTTCCGCCGA TCACGTATCC CGAAAGCCTG
CCCGTATCGG GCAAGCGCGA CGAAATCGCG CGCGCGATCG CCGATCATCA GGTCGTCATC
GTCTGCGGCG AAACGGGTTC GGGCAAGACC ACCCAGCTGC CGAAGATCTG TCTCGATCTC
GGCCGCGGCC TCGGCGCCGG CGGCACGGGC CTGATCGGCC ATACGCAGCC GCGGCGCCTG
GCCGCGTCGT CGACCGGCCG GCGGATCGCC GAGGAACTCG GCACGCCGTT CGGCGAGGTG
GTCGGCTACA AGGTGCGCTT CACCGACAAT CTCGCGCCGG GCGCGTCCGT GAAGCTGATG
ACGGACGGCA TCCTGCTCGC CGAGACGCAG ACCGACCCGC TGCTGAAGGC GTACGACACG
CTGATCATCG ACGAGGCGCA CGAGCGCAGC CTGAACATCG ACTTCCTGCT CGGCTACCTG
AAGGAAATCC TGCCGAGGCG GCCGGACCTG AAGCTGATCG TCACGTCTGC GACCATCGAC
GCCGACCGCT TCGCGCGCCA TTTCGGCAGC GACGCGCGCC CGGCGCCGGT GATCGAGGTG
AGCGGGCGGC TGTATCCGGT CGAGATGCGC TACCGCCCGG TGGCCGAGGA TCGCCCGGCC
GTGAAGAACG CCGAGGGCAC GGGCGGGCGC GATCGCGTGA AGACCGCGCG CGAGGCCGAA
CGCGACCTGA TGGACGCGAT CGTCGACGCG GTCGACGAAC TGTGTCGCGA AGGCCCCGGC
GACGTGCTGG TGTTCCTGCC CGGCGAGCGC GAGATTCGCG AAGCGGCCGA GGCGCTGCGC
AAGCACCATC CGCCGCATAC CGAGATCCTG CCGCTGTTCG CGCGACTCTC GGCGGCCGAC
CAGGACAAGG TGTTCAAGGC GTCGAACGCG CGCCGCATCG TGCTCGCGAC CAACGTGGCC
GAAACGTCGC TGACGGTGCC GGGCATCCGC TACGTCGTCG ACACCGGTCT CGCGCGCGTG
AAGCGCTATT CGTACCGGAA CAAGGTCGAG CAGCTGCAGG TCGAGTCGAT CTCGCAGGCC
GCCGCGAATC AGCGCGCGGG CCGCTGCGGC CGGGTGGCCG ATGGCGTGTG CATCCGCTTG
TACGAGGAAA GCGACTACCA GGCGCGCGCA CGCTTCACCG ATCCGGAAAT CCTGCGCTCG
TCGCTCGCGT CGGTGATTCT GCGAATGAAG TCGCTGCACC TGACCGAGAT CGAGTCGTTC
CCGTTCCTCG AGCCGCCGCC CGGCCGCGCG ATCGCGGACG GCTACCAGTT GCTCAACGAA
CTCGGCGCGG TCGACGACGA CAACGCGCTG ACGCCGCTCG GCCGCGAGCT CGCGCGGCTG
CCGCTCGATC CGCGTGTCGG CCGGATGATC CTCGGCGCGC GCGACCAGCA GTCGCTGCGC
GAGGTGCTGA TCATCGCGAG CGCGCTGTCC GTGCAGGACC CGCGTGACCG TCCGATCGAA
GCGCAGGAGC AGGCCGACCA GGCGCACCGC CGGTTTGCCG ACGAGCGCTC CGAATTCCTG
CAGTGGCTGA AGATCTGGGC GTGGTTCGAA GAGGCCGTCG CGCACAAGAA ATCGAACCGT
CAGCTGATCG ATGCATGCCG GCAGAACTTC CTGTCGCACC TGCGGCTGCG CGAATGGCGC
GACGTGCATT CGCAACTGCT GACGGTCGTG CGCGAGCATG GCTGGCGGCT CAACGAAGTC
GAGGCGACCT ACGAGCAGAT CCATCTGGCC CTGTTGACGG GCCTGCTCGG CAACCTCGGC
ATGAAGGCCG ACGACGATCC GCACTACCTC GGCGCGCGCG GGATCAAGTT CTACCTGTGG
CCGGGCTCCG CGCTGGCGAA GAAGGCCGGC CGCTGGGTGA TGGCGGCCGA ACTCGTCGAG
ACGAGCCGGC TGTACGCGCG CTGCCTCGCG AAGATCGAGC CGGAGTGGAT CGAGATGGTC
GGCGCGCACC TGCTGAAGAA GTCGCTGTCG GAGCCGCACT GGGAAAAGCG TCCCGCGCAG
GTCAGCGCAT TCGAGCGCGC GACGCTGTAC GGGCTGCCGA TCTACCACCG CCGGCGCGTC
GCGTTCGGCC GGCAGGATCC GGCGCGCGCG CGCGAGCTGT TCATCCGCGG CGCGCTGGTC
GAGGGCGAGT TCGACACGAA GCTGCCGTTC TTCGCGCACA ACCGCAAGCT GCTCGCCGAC
ATCGAGCAGC TCGAGCACAA GTCGCGCCGG CAGGACGTGC TGGTCGACGA CGAACTGATC
TACGCGTACT ACGACCAGGC GATTCCGGAG GGCATCCACA CGGGCGCCGC GTTCGAGCGC
TGGTATCGCG ACGAGGTGAG CAAGGGCGGC CGGGCGGAGG ACAAGCAGCG GCTGCTGTAC
CTGTCGCGCG ACGACCTGAT GCGCCACGAG GCGGCCGGCG TGACGACCGA GCTGTTCCCG
AAGCGCGCGA CGATGGCCGG CGTCGAGATG GCGCTCACGT ACCACTTCGA GCCCGGCACG
CCGCGCGACG GCGTGACGCT CGCGGTGCCG CTGTATGCGC TGAACCAGGT CGACGCGCGC
CGCTGCGAAT GGCTCGTGCC GGGGATGCTG AAGGAGAAGG TGCAGCTGCT CCTGAAGTCG
CTGCCGCAGA AGCTGCGCCG GCACTGCGTG CCGCTGCCCG AGTACGCGGC CGGCTTCGTC
GAGCGCATGG GGCGCGAGCG CTTCGGCGCG GGCGGTCTCG TCGAGGCGCT GATCGCCGAC
GTGCGCGGCG AGACGCAGGT CGCGATGAAG ACGGCCGACT TCAAGCTCGA GACGCTGCCC
GCGCACCTGT TCATGAACTT CAAGGTGATC GACGAGCACG GCCGCCAGCT CGCGATGGGG
CGCAATCTCG CGCAGCTTCG ACAGGAGCTG GGGGCGCAGG CGCAGCAGCA GTTCCAGAAG
ATCGCGGCGG CGTCGACGAT CGCGCCCGGC GGCGACGCTG GCGCGGGCGA CGCTGGCGAC
ACGCCGGCGC CCGCTGCCGT ACCGGGTTCG GCGGCGAAGG GTGGCAAGGC CGGCAAGGGC
ACCGCGCCGC ACACGGGCGC CGCGCGGATG GCCGCCCCGG CGGAAGCCGG CGCGACCGCG
CTGTATGAGA ACCTGACGAC GTGGAACTTC GGCAAGCTCC CCGAGCTGCT GGAGATCCGC
CGGCGCGGCC AGACGCTGTA CGGCTATCCG GCGCTCGTCG ATCGCGGCAC GCATTGCGAC
GTCGAGGTGT TCGACTCGCC GGAGGAGGCC GCGCGGATTC ACCGGGCCGG CTTGCGGCGG
CTGTTCGCGC TGCAACTGAA GGAGCCGATC AAGTTCCTCG AGAAGAACCT GCCGGGGCTG
CGCGAGATGG CGATGCAGTA CATGTCGCTC GGCACGCAGG ACGAGCTGCG CGACCAGCTG
ATCGACACGG CGCTCGACCG CGCGTGCCTG CAGGATCCGC TGCCCGACGA CGACGCGAGC
TTCCATGCGC GCCGCGACGA GGGCCGCAGC CGCCTGAACC TGCTCGCGCA GGAGATCGCG
CGGCTCGTCG GGCAGATCCT CGCCGAATAC GCGGGGCTCG TGAAGAAGCT CGCGCAGGCG
AAGCCGTTCG CGCAGGCCCA CGCGGATCTT CAGCAGCAGC TCGCGGCGCT GGTCGGCAAG
CGCTTCGTGA TCGACACGCC TTACACGCAG CTTGCGCACT TCCCGCGCTA TCTGAAGGGC
ATCGCGTTGC GGATCGACAA GCTGAAGGCC GACCCGGCGC GCGACGCGAA GCAGTCCGCC
GAGCTGCTGC CGCTCGTGCA GCAGTACCAG CGCGCGGTGT CGCAGCGCGG CGGCGTCGCC
GATCCGCGGC TCGCGGAATT CCGCTGGCTG CTGGAAGAAT TGCGAATTTC GCTGTTCGCG
CAGGAACTGC GCACGCCGAT GCCGGTCTCT GTCAAGCGTC TGCACAAGGT GTGGGAGTCG
ATGCAGCGCT AG
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| Protein sequence | MSNVPKSPAP TRAKAPSARH PDGAADAREQ QGQSPRQPQQ QQAGKPPRGP RGEERRGDAR
QPAAATDAAR ADARPPRRER APRAAVAPNP VPPITYPESL PVSGKRDEIA RAIADHQVVI
VCGETGSGKT TQLPKICLDL GRGLGAGGTG LIGHTQPRRL AASSTGRRIA EELGTPFGEV
VGYKVRFTDN LAPGASVKLM TDGILLAETQ TDPLLKAYDT LIIDEAHERS LNIDFLLGYL
KEILPRRPDL KLIVTSATID ADRFARHFGS DARPAPVIEV SGRLYPVEMR YRPVAEDRPA
VKNAEGTGGR DRVKTAREAE RDLMDAIVDA VDELCREGPG DVLVFLPGER EIREAAEALR
KHHPPHTEIL PLFARLSAAD QDKVFKASNA RRIVLATNVA ETSLTVPGIR YVVDTGLARV
KRYSYRNKVE QLQVESISQA AANQRAGRCG RVADGVCIRL YEESDYQARA RFTDPEILRS
SLASVILRMK SLHLTEIESF PFLEPPPGRA IADGYQLLNE LGAVDDDNAL TPLGRELARL
PLDPRVGRMI LGARDQQSLR EVLIIASALS VQDPRDRPIE AQEQADQAHR RFADERSEFL
QWLKIWAWFE EAVAHKKSNR QLIDACRQNF LSHLRLREWR DVHSQLLTVV REHGWRLNEV
EATYEQIHLA LLTGLLGNLG MKADDDPHYL GARGIKFYLW PGSALAKKAG RWVMAAELVE
TSRLYARCLA KIEPEWIEMV GAHLLKKSLS EPHWEKRPAQ VSAFERATLY GLPIYHRRRV
AFGRQDPARA RELFIRGALV EGEFDTKLPF FAHNRKLLAD IEQLEHKSRR QDVLVDDELI
YAYYDQAIPE GIHTGAAFER WYRDEVSKGG RAEDKQRLLY LSRDDLMRHE AAGVTTELFP
KRATMAGVEM ALTYHFEPGT PRDGVTLAVP LYALNQVDAR RCEWLVPGML KEKVQLLLKS
LPQKLRRHCV PLPEYAAGFV ERMGRERFGA GGLVEALIAD VRGETQVAMK TADFKLETLP
AHLFMNFKVI DEHGRQLAMG RNLAQLRQEL GAQAQQQFQK IAAASTIAPG GDAGAGDAGD
TPAPAAVPGS AAKGGKAGKG TAPHTGAARM AAPAEAGATA LYENLTTWNF GKLPELLEIR
RRGQTLYGYP ALVDRGTHCD VEVFDSPEEA ARIHRAGLRR LFALQLKEPI KFLEKNLPGL
REMAMQYMSL GTQDELRDQL IDTALDRACL QDPLPDDDAS FHARRDEGRS RLNLLAQEIA
RLVGQILAEY AGLVKKLAQA KPFAQAHADL QQQLAALVGK RFVIDTPYTQ LAHFPRYLKG
IALRIDKLKA DPARDAKQSA ELLPLVQQYQ RAVSQRGGVA DPRLAEFRWL LEELRISLFA
QELRTPMPVS VKRLHKVWES MQR
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